Amycolatopsis sp. AA4: CU254_02740
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Entry
CU254_02740 CDS
T05278
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CU254_02740 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_02740 (xth)
Enzymes [BR:
amyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
CU254_02740 (xth)
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CU254_02740 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ATY16107
LinkDB
All DBs
Position
546361..547176
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AA seq
271 aa
AA seq
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MRGVLIVSTVNVNGLRAAVKKGFVEWLAATEADVVACQEVRAEAAQLPASVVAPEGWFAA
HAPSVVKGRNGVSLYSRVEPDEVRTGFGEPEFEDSGRYLEMHLPGVVVASLYLPSGDVGT
ERQDEKERFMDAFLPYLVELRAKSAAEGREVVVVGDWNIAYDTVDLKNWRGNQKNSGFLP
EEREWMGRVYEAGYTDVQRRLDPEGPGPYTWWSYRGKAFDNDSGWRIDCQLATPGLAEKV
KSVVVERAESYDQRWSDHAPVTATYDVPFPG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggggtgctaatcgtctccactgtcaacgtcaatggcctccgggccgccgtcaag
aagggcttcgtcgagtggctggccgccactgaggcggatgtcgtcgcgtgtcaggaagtg
cgggccgaggccgcgcagctgcccgcgtccgtcgtcgcgccggaggggtggttcgccgcg
cacgcgccttcggtcgtgaaggggcgcaacggcgtctcgctgtacagccgcgtcgagccg
gacgaggtgcgcaccgggttcggcgagcccgagttcgaggacagcgggcggtacctggaa
atgcacctgcccggtgtggtggtggcgagcctgtacctgccgagcggcgacgtcggcacc
gagcggcaggacgagaaggagcgcttcatggacgcgttcctgccgtacctggtcgagctg
cgcgcgaagtcggccgcggagggtcgcgaggtcgtcgtggtgggcgactggaacatcgcc
tacgacaccgtcgacctcaagaactggcgcggcaaccagaagaactccggcttcctgccc
gaggaacgcgagtggatgggccgcgtctacgaggcgggctacaccgacgtccagcgtcgg
ctcgacccggaaggtccgggcccgtacacgtggtggtcgtaccggggcaaggcgttcgac
aacgactcgggctggcgcatcgactgccagctggcgacgcccggcctggcggagaaggtg
aagtcggtggtggtcgaacgggccgagtcctacgaccagcgctggtcggaccacgcgccg
gtcaccgcgacgtacgacgtgccgttcccgggctga
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