Amycolatopsis sp. AA4: CU254_04095
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Entry
CU254_04095 CDS
T05278
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03420
Nucleotide excision repair
amyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CU254_04095
03430 Mismatch repair
CU254_04095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_04095
Enzymes [BR:
amyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CU254_04095
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CU254_04095
MMR (mismatch excision repair)
Other MMR factors
CU254_04095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Replic_Relax
Motif
Other DBs
NCBI-ProteinID:
ATY09738
UniProt:
A0A2K8LQP0
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All DBs
Position
816764..820138
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AA seq
1124 aa
AA seq
DB search
MSPVVVANPVGPAEIADALGLHRPTPEQATVIASPVEPSLVVAGAGAGKTETMAARVVWL
VANGIVSPERVLGLTFTRKAARQLGERVRARLRRLAGSGLLERIDPSGALRATVVAGEPT
VLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDNDLDTDRVPPTVTAQ
LLALAGELGEHLISTEQLGQYTEWLCEIIENAPRAKGQRASLPVKLQEVLAAQRFRLALL
PLVEDYHRRKRAEGALDFADQMSLAAQLADGYPAVVAGERERYGAVLLDEYQDTGHAQRV
LLRSLFGGVDHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRRGEERLETAHEFGL
LTSFRNPPEILELANAISEPLRQRGLGVERLRARDGAGPADIAVALLPDVRAEREWVADA
MAQRWHAEKEASGKPPTAAVLVRRRADMAPIAAEMRMRGLPVEVVGLGGLLDEPEVADLV
STLRVLADPLAGSAAARLLTGARWRIAAADVAALWRRANELTSPEPRAKEGEEPELVAER
AEQAGLIDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQSLPELVADVERTMLLDV
ESLARPGSAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVQVVPD
RVQVLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTSTALPAHLRGDAADLPKLQI
SEGYDRKEVQEALELHEEGFVAREADEERRLCYVALTRSERALLVSGHWWNESSTRAKGP
SIFLTEIAEVMNEADPPLGVVDVWAEEPEEGDENPLVADSRTAQWPVDPLGDRRSGVATG
VELLLAEMAALEEEPEPEPEAEPLPAADDDEIPLPPEPEDDYPPDDEYFEDDEDVIDPED
PDGWAADTDVLLAERARSQSTVDRVALPAQLSVSQLVDLASDADALAQRLRRPLPLPPNT
FARRGTAFHSWLEQRFSGDRLLEIDDLPGAADVGEAPDTDFEALQEAFENSEWADRVPLA
VEVPFSADIEGITLRGRMDAVYADPDGGWTVVDWKTGSVPSEERLPALAIQLGAYRLAWA
ALKKVPVERVRAAFHYVRHGHTLRPADLLDAEGLRSLLRNVPQE
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccggtggtcgttgccaacccggtcggacccgcggaaatcgcggacgcactgggg
ttgcaccgtccgacgcccgagcaggcgaccgtgatcgcgtcgccggtcgagccgtcgctg
gtcgtcgcgggcgcgggcgcgggaaagaccgaaaccatggccgcgcgcgtggtctggctg
gtggccaacggaatcgtgagcccggagcgggtactcggcctgaccttcacccggaaagcc
gcgcgtcagcttggcgaacgggtgcgggctcggttgcggcggctcgctggttcggggctg
ttggaacggatcgatccgtcgggcgcgttgcgggccactgtggtcgcgggtgaaccgacg
gtgctgacgtatcacgcgtatgccggacggttgttgtcggagcatgggttgcggcttccg
gtgcagcctggcgtccgattgctgtcggagacttcttcgtggcagctggcacatcgcgtg
gtgtccacttgggacaatgacctggacaccgaccgggtgccgccgacggtcaccgcgcag
ctgctcgcgctggccggtgaacttggcgagcatctgatttcgacggagcagctcgggcag
tacacggagtggctgtgcgagatcatcgagaacgctccgcgcgctaagggccagcgtgcg
tcgctgccggtgaaactgcaggaagttctggcagcacaacggtttcgattggccttgctg
ccattggtcgaggattatcatcggcgcaaacgggcggaaggcgcgctcgacttcgcggat
cagatgtcgctggccgcgcagctcgccgacgggtatccggcggtggtcgcgggggagcgc
gagcggtacggggcggtgctgctggacgaataccaggacaccgggcacgcgcaacgagtg
ctgctgcggtcgttgttcggcggcgtggatcatccgccgatgccggtgaccgcggtcggc
gacccggcacaggcgatttacggctggcgcggcgcgagtgcggcgaacctgccccgattc
accaccgacttcccgcgtcggggcgaggaacggctggaaaccgcccacgaattcgggctg
ctcaccagtttccgcaatccgcccgaaatcctggaactggccaacgcgatctcggaaccg
ttgcggcagcgcggacttggcgtcgaacggctgcgggcgcgagacggggccggcccggcg
gacatcgcggtcgcgctgctgccggacgtgcgcgcggaacgcgagtgggtcgcggacgcg
atggcacagcggtggcatgcggagaaagaagcctccggcaagccgccgaccgcggcggtg
ctggtgcgccgccgggcggacatggcgccgatcgcggcggaaatgcggatgcgcgggctg
ccggtggaggtcgtgggcctcggcggattgctggacgaaccggaggtcgccgacctggtc
tccaccctgcgggtgctcgccgatccgctggcgggcagcgcggcggctcggctgctgacc
ggcgcgcggtggcggatcgcggcggcggacgtcgcggcgttgtggcggcgggccaacgaa
ctcacctcgcccgagccgcgggcgaaggagggcgaagagccggaactggtcgccgaacgc
gcggaacaagccgggctgatcgacgccgtcgacgaacccggtgcgccagagcgttattcc
ccggaagggtatcggcgaattcgccgcctgggcgcggaattgaccgcgctgcgacggcgg
ctggatcagtcgctgccggaattggtggcggacgtcgaacgcacgatgctgcttgacgtc
gaatcgcttgcccgtcctggatcggccgggcgcgcgcatttggacgcgttcgcggaagtc
gttaccgattacgcggagaccgcgccgacggcgactcttttgtcctttgtggactacctg
aacaccgcggcgcacgcggaagacggcctcacgcctggcgaggtgcaggtggttccggat
cgcgtgcaggtgctcaccgtgcactccgccaaggggctggagtgggaagtggtggcggtc
ccgcatctggtcgctgaggtgttcccgggcaagcgtcgttcgtcttcgtggttgcgcacg
tccactgcgttgcccgcgcatttgcggggcgacgcggcggatctgccgaagctgcagatc
tcggaaggctatgaccgcaaggaagtgcaggaagcgctggagctgcacgaggaagggttc
gtcgcgcgcgaagccgacgaggaacgacggttgtgttacgtcgccttgacccgttccgag
cgtgcgctgctcgtttccggacattggtggaacgaaagcagcacacgggctaagggaccg
tcgatcttcctgaccgagatcgccgaagtgatgaacgaggccgatccgccgctgggcgtc
gtggacgtctgggccgaggaaccggaggagggcgacgagaacccgctggtcgcggactcc
cggacggcgcagtggccggtggacccgctcggtgaccggcggtccggcgtggcgaccggc
gtggagctgctgctggcggaaatggccgcgctggaagaggaacccgagcccgaaccggaa
gccgagccgcttccggcggccgacgacgacgaaatcccgctgccgccggaaccggaagac
gactacccgccagacgacgaatacttcgaagacgacgaggacgtcatcgatccggaagac
ccggacggctgggctgccgacaccgacgttctcctcgccgaacgcgcccgctcgcagtcc
acagtggatcgtgtcgcgctgcccgcgcagctgagcgtgagccagctggtcgacctggcg
tccgatgcggacgctctcgcgcaacggctgcgtcgtccgcttccgttgccgcccaacacc
ttcgctcgccgcggtaccgcattccacagctggctggagcaacggttttccggcgaccgg
ctgctggagatcgacgacctgcccggcgcggccgacgtcggcgaagcaccggacaccgat
ttcgaagccctgcaagaagctttcgagaacagcgaatgggccgaccgggtcccgctcgcg
gtggaggtgccgttctccgcggacatcgaaggcatcactctgcgcggccggatggacgcc
gtgtacgcggatcccgacggcggttggactgttgtcgactggaaaaccggctccgtgccg
tccgaggaacggttgccagcgttggcgattcagctcggcgcgtaccgattggcgtgggcg
gcgctgaagaaggttccggtggagcgggtgcgcgcggccttccactatgtccgacatgga
cacacgctgcgcccggccgatctgctggacgcggaaggcctgcgttccttgctgcgcaac
gttccgcaggagtga
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