Amycolatopsis sp. AA4: CU254_24930
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Entry
CU254_24930 CDS
T05278
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
amyc
Amycolatopsis sp. AA4
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyc03016
]
CU254_24930
Enzymes [BR:
amyc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CU254_24930
Transfer RNA biogenesis [BR:
amyc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CU254_24930
Prokaryotic type
CU254_24930
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
ADH_zinc_N
LPP
DKCLD
Motif
Other DBs
NCBI-ProteinID:
ATY13318
LinkDB
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Position
complement(5382089..5383006)
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AA seq
305 aa
AA seq
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MSRPKEPRRPAPPPGLLIVDKPAGMTSHDVVARARRIMGTRKVGHAGTLDPMATGVLVLG
IERATKLLGHLALDRKTYLATLSLGRSTTTDDAEGEPLENDAAPETLAAVTDEQIADGVA
QLTGDIQQVPSAVSAVKIDGKRAYARVRAGEDVVLPPRPVTVHRFDVLGLRREDDRIELD
AVVECSSGTYVRALARDLGAGLGVGGHLKALRRTTVGPFTLARARTLDQLEEKPELSLDL
DAAVAAAFPRRDLDAATAKAVQYGRRIPAAGIAGTYGLFAPDGHVLALASDAEGVTRSVV
VLLPA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcgcccgaaagaaccgcgtcgtcccgcccctcctcccggactgctcatcgtcgac
aaaccggcgggcatgacgtcgcacgacgtggtcgcgcgggcgcggcggatcatgggcacc
cgcaaggtcggccacgccggcacgctcgacccgatggcgaccggcgtgctcgtgctcggc
atcgaacgcgccaccaaactcctcgggcacctcgccctcgaccgcaagacctacctcgcc
accctgtcgctcggccggtccaccaccaccgacgacgccgagggcgaaccgctcgaaaac
gatgccgcgccggaaaccctcgccgcggtcaccgacgagcagatcgccgacggcgtcgcg
cagctgaccggtgacatccagcaggtgcccagcgcggtctccgcggtcaagatcgacggc
aagcgcgcctacgcccgggtgcgcgcgggcgaggacgtcgtcctcccgccgcggccggtg
accgtgcaccggttcgacgttctcggccttcgccgcgaggacgaccggatcgaactcgac
gcggtcgtcgaatgctcgtccggcacctacgtccgcgcgctcgcccgcgatctcggcgcg
ggactcggcgtcggcgggcacctgaaagccttgcgccgcaccacagtcgggccgttcacg
ctcgcccgcgcgcgcacgctcgaccagctcgaagaaaagcccgaactgtccctggacctc
gacgccgccgtcgccgctgcgttcccgcgccgggatctcgacgccgccaccgccaaggcc
gtgcagtacggcaggcgcatccccgccgcgggaatcgccggcacgtacggcctgttcgcg
ccggacggccacgtgctcgcgctggcctcggacgccgagggagtgacccgctcggtggtg
gtcctcctgcccgcatag
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