Amycolatopsis sp. AA4: CU254_26800
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Entry
CU254_26800 CDS
T05278
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CU254_26800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyc03019
]
CU254_26800
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_26800
Enzymes [BR:
amyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CU254_26800
Messenger RNA biogenesis [BR:
amyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CU254_26800
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CU254_26800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
PglZ_C
DUF8096
NAT10_TcmA_helicase
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ATY13636
LinkDB
All DBs
Position
5779803..5781911
Genome browser
AA seq
702 aa
AA seq
DB search
MDTTEALRTRAETLLRALAGDNAALREDQWTAIEALVAHHRRALVVQRTGWGKSAVYFLA
TALLREQGAGPTVIVSPLLALMRNQISAAARAGIHAATINSANAQEWDQVQASVAAGEVD
VLLVSPERLNNPDFRDSVLPKLTASAGLLVVDEAHCISDWGHDFRPDYRRLRTLLGDLPE
GVPVLATTATANDRVATDVAEQLGIGGETDTLVLRGPLDRESLRLAVAELPSDEARLAWL
AEHLAELPGSGIIYTLTVAAAHDVTALLSDRGYPVAAYTGKTDPADRQAAEDDLLENRVK
ALVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRGVERAEVVLLPGREDKAIW
AYFGSLAFPDELRVTQVLNALAYADRPLSTAALEPSVELSRSRLEMVLKVLDVDGAVRRV
RGGWESTGQPWEYDRERYERVGVARAAEQEAMLGYIRTAGCRMEYLRRQLDDPEAAPCGR
CDNCTGEHWSTAVSEEIAGATRERLDRPGVEVAPRKQWPSGMKGLDVPLSGRIKTEEQAE
PGQALGRLTDVGWGGRLRELLGPGAPDAEVPDSVFDACVKVLAGWQWAQRPVAVVAIPSA
TRPQLVDSLALRLSAIGRLDYLGELASAGPPPRQANSAQRLADLWRRLSLPEDVAANVAQ
TRGPVLLVDDLIDTGWTMTLAARLLRKAGAEGVLPFALATTA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggacaccaccgaagctctacggacccgcgcggagaccctcctccgcgcgctcgccgga
gacaacgccgccctccgagaggaccagtggaccgccatcgaggcactggtcgcgcaccac
cggcgcgcgctcgtcgtgcagcgcaccggctgggggaagtcggccgtgtacttcctggcc
accgcgctgctgcgggaacagggagcggggccgacggtcatcgtgtcgccgctgctcgcc
ctgatgcgcaaccagatctccgccgccgcccgggcggggatccacgcggccacgatcaac
tcggcgaacgcgcaggagtgggaccaggtccaggcgtcggtggccgcgggcgaggtggac
gtgctgctggtcagtccggaacggctgaacaacccggacttccgcgacagcgtgctgccg
aagctcaccgcgagcgcaggcctgctggtggtggacgaggcgcactgcatttccgactgg
ggccacgatttccggccggactaccggcggctgcgcacgctgctgggagacctgccggag
ggcgtgccggtgctggccaccaccgcgaccgcgaatgaccgcgtggccacggacgtcgcc
gagcagctcggcatcggcggcgagacggacacgctcgtgctgcgcggtccgctcgaccgg
gaaagcctgcggctggcggtcgccgaactgcccagcgacgaggcacggctcgcttggctc
gccgagcacctggcggagctgcccgggtcgggcatcatctacacgctcaccgtcgccgcc
gcgcacgacgtcaccgcgctgctgtccgatcgcggctatccggtggccgcctacaccggg
aaaaccgatccggccgaccgccaggccgcggaggacgacctgctggagaaccgggtcaag
gcgctcgtggcgacgtcggcgctcggcatggggttcgacaagccggacctcgggttcgtg
gtgcacctcggcgcgccgtcgtcgccgatcgcctactaccagcaggtcggccgcgccggt
cgcggcgtcgagcgggccgaggtggtgctgctgcccggacgggaggacaaggcgatctgg
gcgtacttcgggtcgctggcgttcccggacgaactgcgggtcacgcaggtgctcaacgcg
ctcgcgtacgccgaccgtccactttcgacagccgcgctggagccgtcggtcgagctctcc
cggtcccgtctggagatggtgctgaaagtgctcgatgtggacggtgcggtgcgccgggtg
cgcggcggctgggaaagcaccgggcagccgtgggagtacgaccgggaacggtacgaacgc
gtcggcgtcgcgcgggcggccgagcaggaggcgatgctcgggtacatccgcacggccggg
tgccggatggagtacctgcggcggcagctcgacgacccggaggcagcgccgtgcggccgg
tgcgacaactgcaccggcgagcactggagcacggcggtgtccgaggaaatcgccggggcc
acgcgggaacggctggaccggcccggcgttgaggtggcgccgcgcaagcagtggcccagc
gggatgaaggggctcgacgtgccgctgtcgggccggatcaagacggaggagcaggccgag
ccgggacaggcgctgggccggctcacggacgtgggctggggcggccggttgcgcgaactg
ctcggcccgggcgcgccggacgccgaggtccccgactcggtgttcgacgcgtgcgtgaag
gtgctcgcgggatggcagtgggcgcaacgcccggtggcggtggtggcgatcccgtcggcg
acgcgtccgcaattggtcgacagcctcgcgctgcggctgtcggcgatcggccggctggac
tatctgggagagctggcgtcggccggaccgccgccgcggcaagcgaacagcgcccagcga
ctggccgatctgtggcggcggctgagcctgccggaggacgtggcggcgaacgtcgcgcaa
acgcgcgggccggtgctgctggtggacgacctgatcgacaccggctggacgatgacgctg
gcggcccggctgctgcgcaaggccggggcggagggggtgttgccgttcgcgttggcgact
actgcttga
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