Amycolatopsis sp. AA4: CU254_26875
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Entry
CU254_26875 CDS
T05278
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CU254_26875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyc03019
]
CU254_26875
03009 Ribosome biogenesis [BR:
amyc03009
]
CU254_26875
Enzymes [BR:
amyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CU254_26875
Messenger RNA biogenesis [BR:
amyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CU254_26875
Ribosome biogenesis [BR:
amyc03009
]
Prokaryotic type
rRNA processing factors
CU254_26875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
RD3
STING_LBD
Motif
Other DBs
NCBI-ProteinID:
ATY13650
UniProt:
A0A2K8M326
LinkDB
All DBs
Position
complement(5796625..5799789)
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AA seq
1054 aa
AA seq
DB search
MSNADTPADQTGGNTAAPTTSRLGELPPRIRVHALAKLLGLSSRDLLGKLAELGESPRSA
QSSVTKEVAHRVAVILDAEAAGSGDTAAEAADQGATAGNEAAGQAASQPAAEAQDSEAAP
AAAAQETADAAPETAAAEDAASPESGTPEAAAAQASEPAAEQEAAAAAATPAGPSAAETA
EPEAAPESGEKRTRTRRARRAVAPAIPAEQQETEQATPARGPVHVPVFAAPSPVFLPPEP
AQPARSKPEPLFGVGEAPAQAERPGRTESAAEEETSDEARDERSDEDNDDAGGRRRRRRG
RRGRGRGKGGDEAQSENEDETSEDQQVQQSKDGKDSKDKTEKPDEAGEADADSDDDAESE
SGTKRRRRRRRRKGGEDDAAETTGSDDPPNTVTHVRQAKAAEAERPARDEVRSVRGSTRL
EAKRQRRRDGREAGRRRAPILSEAEFLARRESVDRTMVVAEKGDSTQIAVLEDGVLVEHF
VTSSGTGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIE
QALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLK
DILKRIVPEDAGVIIRTASEGISEEELDRDVQRLKAQWDVIKEKASAGSAKKGGAPTMLY
EEPDLLVKVVRDLFTEDFAKLEVQGSTAWETIHGYVQHVAPDLTDRLKRYTGNGDAFADH
RIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAE
EIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMT
RKKIGTGLLEAFSTPCEHCKGRGVVVSTEPQRTAGGGTGNGHNGGNGHNGHSHGGGDTKS
SRRSRGRGKGEEQHHEPKPEPAAPAPTPVQRESVVSAVQAMANASKAKHEHHAPEAAEAK
EPETAAQPSEQGEQQPEPKTEAPAPVQQPEPTQPEPAVSEAAPAAEAPKETAEAASEEEP
EVDVPAPAVRSTRRRPRRAASRPAGPPVKASEQS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgatcagaccggcgggaataccgccgcacccacgacc
agcaggctgggcgagctgccgccgcgcatccgcgtgcacgcgctggccaagctgctcggc
ctgagcagccgcgacctgctcggcaagctcgccgagctgggggagagcccccgcagcgcc
cagtcgagcgtgaccaaggaggtcgcgcaccgcgtggccgtcatcctcgacgcggaggcc
gccggatcgggcgacaccgccgccgaggccgccgaccagggcgcgaccgccgggaacgaa
gccgccgggcaggccgccagccagccggccgccgaggcccaggacagcgaggccgccccg
gctgccgctgcccaggagaccgcggacgccgctccggaaaccgccgccgcggaggacgcc
gcttcgcccgagtccggcactccggaagccgctgccgcgcaggcttcggaacccgccgct
gagcaggaggccgccgcggcggcggcgaccccggccggcccgtccgccgccgagaccgcc
gagccggaagccgctccggagtccggcgagaagcgcacccgcacccgtcgggcccgccgg
gccgtcgcgcccgcgatcccggccgaacagcaggaaaccgagcaggccaccccggcccgc
ggcccggtgcacgtgccggtcttcgccgcgccctcgccggtcttcctgccgcccgagccc
gcgcagccggcgcggagcaagccggagccgttgttcggcgtcggcgaggctcccgcgcag
gccgagcgtccgggccggaccgagagcgccgccgaggaggaaacctcggacgaggctcgc
gacgagcgttccgacgaggacaacgacgacgcgggcggccgccgccggcgccgtcgcggc
cgtcgcggccgcggccggggcaagggcggcgacgaggcccagtccgagaacgaggacgaa
acctccgaagaccagcaggtccagcagtcgaaagacggcaaggacagcaaggacaagacc
gagaagccggacgaggcgggcgaagccgacgcggactccgacgacgacgccgagtccgag
agcggcaccaagcgccgccgccgtcgccgccgccgcaagggcggggaggacgacgcggcc
gagacgaccggcagcgacgacccgccgaacaccgtcacgcacgtccgccaggccaaggcc
gccgaggccgagcgcccggcgcgcgacgaggtgcgcagcgtccgcggctccacgcggctg
gaggccaagcgccagcgccgccgcgacggccgcgaggcgggccgccgccgcgccccgatc
ctgtccgaggccgagttcctcgctcgccgcgagtcggtcgaccgcaccatggtcgtcgcc
gagaagggcgactccacgcagatcgccgtgctcgaggacggcgtgctggtcgagcacttc
gtgacgtcgtcgggcaccggctcgatcgtcggcaacgtctacctcggccgcgtccagaac
gtgctgcccagcatggaggccgcgttcatcgacatcggccgcggccgcaacgccgtgctc
tacgcgggcgaggtcgactgggacgccgccggcctggaaggcaaggcgcgcaagatcgag
caggcgctgtccaccggcgacagcgtgctggtgcaggtcacgaaggacccggtcgggcac
aagggcgcccggctgaccacgcagatctcgctgcccggccgcttcctcgtctacgtcccc
gcgggcggggccaccggcatctcccgcaagctgccggagaacgagcggcgccggctcaag
gacatcctcaagcggatcgtcccggaggacgcgggcgtcatcatccgcaccgcgtcggag
ggcatcagcgaggaggagctcgaccgggacgtccagcggctcaaggcgcagtgggacgtc
atcaaggagaaggcctcggccgggtccgccaagaagggcggcgccccgaccatgctgtac
gaggagccggacctgctggtgaaggtcgtgcgcgacctgttcaccgaggacttcgcgaag
ctggaggtccagggctcgaccgcgtgggagaccatccacggctacgtgcagcacgtcgcg
cccgacctgaccgaccggctcaagcgctacaccggcaacggcgacgcgttcgccgaccac
cggatcgacgagcagatcacgaaggcgctcgaccgcaaggtgtggctgccctcgggcggc
tacctggtcatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttc
accggctcgggcggcaacctcgaggagacggtgacccgcaacaacctggagtcggcggag
gagatcgtccgccagctgcggctgcgggacatcggcggcatcatcgtcatcgacttcatc
gacatggtgctcgagtccaaccgcgagctggtgctgcgcaggctcaccgaatgcctcggc
cgcgaccgcacgcgccaccaggtggccgaggtcacgtcgctgggcctggtgcagatgacg
cgcaagaagatcggcaccgggctgctcgaggcgttctccacgccgtgcgagcactgcaag
ggccgcggcgtcgtcgtttccaccgaaccgcagcgcaccgcgggcgggggcaccgggaac
ggccacaacggcggcaacgggcacaacggccacagccacggcggcggcgacacgaagagc
tcgcggcggtcccgcggccgcggcaagggcgaggagcagcaccacgagcccaagccggag
ccggccgccccggccccgaccccggtgcagcgcgagtcggtcgtgtcggcggtgcaggcc
atggccaacgcgtccaaggcgaagcacgagcaccacgctccggaagccgccgaggcgaag
gagccggagacggccgcacagccgtccgagcagggtgagcagcagcccgagcccaagacg
gaggccccggcccccgtccagcagccggagccgacgcagccggagcccgcggtcagcgag
gccgcgccggcggcggaggccccgaaggagaccgccgaggcggcctccgaagaagaaccc
gaggtcgacgtcccggccccggccgtgcgcagcacccggcgccgtccgcgccgcgccgct
tcgcgtccggcagggccgccggtgaaggcttcggagcagagctga
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