Amycolatopsis sp. AA4: CU254_28700
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Entry
CU254_28700 CDS
T05278
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CU254_28700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyc03019
]
CU254_28700
03009 Ribosome biogenesis [BR:
amyc03009
]
CU254_28700
Messenger RNA biogenesis [BR:
amyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CU254_28700
Ribosome biogenesis [BR:
amyc03009
]
Eukaryotic type
Pre-60S particles
RNases
CU254_28700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Con-6
Motif
Other DBs
NCBI-ProteinID:
ATY16671
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All DBs
Position
6196200..6196808
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AA seq
202 aa
AA seq
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MNDHLVWIDCEMTGLDLGKDALIEIAALVTDADLNVLGEGVDIVIHADDAKLDGMPQVVH
DMHAKSGLTEEVRASTTTLAEAEQRVLEYIREWVPDPASAPLAGNSIATDRGFIARDMPE
LDRHLHYRMVDVSSVKELVRRWYPRIYYAKPEKGLAHRALADIKESVGELEYYRAIAFVP
QPGPTSDEAKAAAAEVLERHRG
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaccatcttgtctggatcgactgcgagatgacggggctggacctcggcaaggac
gcgttgatcgaaatagccgcgctggtgaccgacgccgacctgaacgtgctcggcgagggc
gtcgacatcgtcatccacgccgacgacgccaagctcgacggcatgccgcaggtcgtccac
gacatgcacgccaagtccggactcaccgaagaagtccgcgcctcgacgaccacgctcgcc
gaggccgagcagcgcgtgctggagtacatccgcgaatgggtgccggacccggcgagcgcg
ccgctggccggcaactcgatcgccaccgaccgcggcttcatcgcccgcgacatgccggaa
ctcgacaggcacctgcactaccggatggtcgacgtgtcctcggtcaaggagctcgtgcgc
cgctggtacccgcggatctactacgccaagccggagaagggcctggcccaccgcgcgctc
gcggacatcaaggagtcggtcggcgaactcgagtactaccgcgcgatcgccttcgtcccc
cagcccggcccgacgagcgacgaggccaaggccgccgccgccgaagtgctggaacgccac
cgagggtga
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