Amycolatopsis sp. AA4: CU254_39960
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Entry
CU254_39960 CDS
T05278
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CU254_39960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_39960
Enzymes [BR:
amyc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CU254_39960
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CU254_39960
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CU254_39960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Ribosomal_S13
Zn_ribbon_TFIIB
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ATY15876
UniProt:
A0A2K8M5F8
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All DBs
Position
8608505..8609365
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AA seq
286 aa
AA seq
DB search
MPELPEVEALAHHLREHAVGSTVFRLDVASLSVLKTAMPPYTELHGREITGATRHGKHLD
VVLGDLHLVVHLARAGWLRWSDALSPAPLKPGKGPISLRVHLESASGPGFDLTEAGTKKG
LAVWIVADPAEVASVARLGPDALAVDASQLRELFQGKGTRLKWALTDQSLIAGIGNAYSD
EIMHRAKLSPYATVGKLDEGALEVLAEAIREVETDAVSRSVGQKAARLKGEKRSGLRVHA
RTGLPCPVCGDTIREISFADKSFQYCATCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttgcccgaggtcgaagcactggcccaccacctgcgcgaacacgccgtgggg
agcaccgttttccggctggacgtcgcgtcgctgagcgtgctgaagaccgcgatgccgccg
tacaccgagctgcacggtcgcgagatcaccggcgcgactcggcatggcaagcatctggac
gtggtgctgggcgatctgcacctggtggtccatctggcgcgcgcggggtggctgcgctgg
tcggacgcgctgtctcccgctccgttgaagccggggaaggggccgatctcgctgcgggtg
catctggagtcggcttccgggcctggcttcgatctgaccgaggcggggacgaagaagggg
ctcgcggtgtggatcgtcgcggatcctgccgaggtggccagtgtggcgcggttggggccg
gatgcgttggccgtcgatgcttcgcagttgcgggaattgttccaggggaagggaactcgg
ctgaagtgggcgttgactgatcagtctttgatcgcggggatcgggaacgcttattcggac
gagatcatgcatcgggcgaagttgtcgccttatgcgactgtggggaagttggacgagggt
gcgttagaggttttggccgaggctatccgcgaggtggagacggacgcggtttcccggtcg
gtggggcagaaggcggctcggttgaagggggagaagcggtctgggctgcgggtgcatgcc
cggactgggctgccttgtccggtgtgcggggacactattcgggagatttcgtttgcggat
aagtcgtttcagtattgtgcgacttgtcagactggggggaagccgttggctgatcggcgg
atgtctcggttgttgaagtag
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