Amycolatopsis sp. DSM 110486: K1T34_00145
Help
Entry
K1T34_00145 CDS
T10626
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1T34_00145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyd03019
]
K1T34_00145
Messenger RNA biogenesis [BR:
amyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K1T34_00145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF2201
Motif
Other DBs
NCBI-ProteinID:
QYN21042
LinkDB
All DBs
Position
complement(30294..31991)
Genome browser
AA seq
565 aa
AA seq
DB search
MSSLPPGPGPTNLPPALPEGALRVVALGGIGEVGRNMTVFEYDGRFLIVDCGVLFPEDDQ
PGVDLILPDFRAIEERLDDIDGLVLTHGHEDHIGAVPFLLRLRPDLPIYGSRFTNALLAA
KAKEHRQRPNLIEVREGERRKVGAFDLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVIRRVDQRVI
VACFASHVHRVQQVLDAAVRHGRRVAFVGRSMVRNMGIAAELKLLEVPDGLLVDLDQAST
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAIRTG
VSPDNVVIAEDGVVVDLVDGKASRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
SISVAVDSSTGRAVSSPTVSGRGFSDDPKALDAVVPLVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcacttccccccggacccggacccacgaacctcccgcccgcccttcccgaaggc
gccttgcgcgtcgtcgcgctgggcggcatcggcgaggtcggacgaaacatgaccgtcttc
gagtacgacggcaggttcctgatcgtcgactgcggcgtgctcttccccgaggacgaccag
cccggtgtcgacttgatcctgcccgacttccgggcgatcgaggagcggctcgacgacatc
gacggcctcgtgctcacccacgggcacgaggaccacatcggcgccgtcccgttcctgctg
cggctgcggcccgacctgccgatctacggctcgcgcttcaccaacgcgctgctcgcggcc
aaggccaaggagcaccgtcagcggccgaacctcatcgaggtgcgcgaaggcgagcggcgc
aaggtcggcgcgttcgacctcgagttcttcgccgtgaaccactcgatccccgacgcgctc
gcggtcgccatccgcacgcccgccggggtcgtgctgcacaccggtgacatcaagctcgac
cagctgccgctcgacgggcgcctcaccgacctcgcggggttctctcgcctgggcgacgag
ggcgtggacctgttctgcgtcgactccaccaacgccgaggtgcccgggttcgtcatgccc
gaacgcgacatcggcccggtgctcgacgacgtgatccggcgggtcgaccagcgcgtgatc
gtcgcgtgcttcgcgagccacgtgcaccgcgtgcagcaggtgctggacgccgcggtgcgg
cacggtcgccgggtcgcgttcgtgggccgctcgatggtccgcaacatgggcatcgcggcc
gagctgaagctgctcgaggtgccggatggcctgctcgtggacctcgaccaggcgagcacg
ctgcccgagagcaaggtcctgttcgtctcgaccggttcgcagggcgagccgctctcggcg
ctctcgcgcatggcgcgtggcgagcaccggcagatctcgatccgcgcgggcgacaccgtg
gtgctcgccagctcgatgatcccgggcaacgagaccgccgtgttcggcgtggtcaacggc
ctgacccggctcggcgccaacgtggtgcaccagggcaacgccaaggtccacgtgtccggg
cacgcgtcggccggcgagctgctctacctgtacaacgcggtgcgcccgagcaacgtgatg
ccggtgcacggcgagtggaagcacctgcgcgccaacggcgagctggccatccgcacgggt
gtgtcgcccgacaacgtggtgatcgccgaggacggcgtggtcgtggacctcgtcgacggc
aaggcttcgcggactggccgcgtcgaggttggccacgtgtacgtggacggcctttcggtg
ggcgacgtcggcgagtcgacgctgtccgaccggctggtgctcggcgagggcgggttcatc
tcgatcagcgtcgccgtcgactccagcacgggccgcgcggtcagcagcccgacggtgtcg
gggcgcggcttctccgacgacccgaaggcgctcgacgccgtggtgccgctcgtggaaatg
gagctggcgcgcacggaggccgagggcatcaccgacacccaccgcatcgcgcaggcggtg
cgccgggtcgtcgggcgctgggtcgccgacacctaccggcgccggccgatgatcgtcccg
acggtcatcccggtctga
DBGET
integrated database retrieval system
