Amycolatopsis sp. DSM 110486: K1T34_04905
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Entry
K1T34_04905 CDS
T10626
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amyd Amycolatopsis sp. DSM 110486
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyd03019
]
K1T34_04905 (hrpA)
Enzymes [BR:
amyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K1T34_04905 (hrpA)
Messenger RNA biogenesis [BR:
amyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K1T34_04905 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND_NTPase5
nSTAND3
NACHT
SLFN-g3_helicase
T2SSE
AAA_16
TsaE
ABC_tran
AAA_23
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYN21866
LinkDB
All DBs
Position
complement(1014600..1018475)
Genome browser
AA seq
1291 aa
AA seq
DB search
MSTQSPLEALRARLPELMSRDEHRLRRRLDGARRSRDKQAVAERLATDVTAAELRVQRRR
ESVPKIEYPEELPVSKLKDEIGKAIAENQVVIVAGETGSGKTTQLPKICLELGRGIRGQI
GHTQPRRLAARTVADRIASELKTELGDAVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTD
RMLRQYDTIIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPERFSKHFDNAP
IVEVSGRTYPVEVRYRPIIDPDDPEVDPDRDQTQGILDAVMELQSAGPGDVLVFLSGERE
IRDTADALNRLDLRNTEVLPLYARLSSADQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VVDPGNARISRYSHRTKVQRLPIEAISQASANQRKGRSGRTSDGICIRLYSEEDFESRPE
FTDPEILRTNLASVILQMTSLGLGDMAAFPFVEPPDRRQVADGVQLLQELGAFEVDDASK
LTDIGRKLAQLPVDPRMGRMVLEAARNGCVREVMIIAAALSIQDPRERPAEKQQAADQQH
ARFADPTSDFLAYLNLWEYVSEQQKALTGNQFRRLCRNEYLNYLRIREWQDIFSQLRQLA
KPLDISLSTTPADPQHVHTSLIAGLLSHIGLKDPAKGDYLGARGARFSVFPGSALFKKQP
RWVMSAELVETSRLWGRVNARIEPEWVEPLAAHVVKRSYSEPHWERKQGAVMAVEKVTLY
GVPLVADRRVNYGRIDPELSRELFIRHALVEGDWHTNHQFFSENRALLDEVEDLENRARR
RDILVDDETLFEFYDQRVPADVVSVRHFDSWWKKARRGDPDLLSFEKSMLINETAGGVRE
SDYPDSWTQGSQVFGLTYQFEPGADADGVTVHIPLPVLNQVTPDGFDWQVPGLRLELVTA
LIKSLPKALRRNFVPAPDTAAYVLSRVSPSDGPLVEVLSDELFTLRRIDVPLSAYDLSSV
PDHLRVTFRVVDDRGRKVAEGKDLEALKLSLAPKVRETISKAANSIEKAGLVRPTFGSLP
QVFASTQRGHDVKAYPALVDEGASVAVRLLDTPAQQQHAMWAGTRRMLRLNLNSPMKFIT
RSLSNSSKLVLNRNPHGSVAALLEDCVDCAVDSLMTSYGGPAWDEASFASLLEHVRAGLN
PAVLAVLTDVERILRATIDVESVLPDTRGPAESLADMRAQLAGLVHAGFVTETGASRLRD
VERYLRGISRRLDKLVSEPTRDLQRTADIAWITEEYRAALAALPAGTSSPSLSEVRWMIE
ELRVSFFAQTLGTAYPVSLKRITKALDDAPV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcaatcccccctcgaggcgttgcgcgcgcggctgcccgagctgatgtcgcgc
gacgagcaccgcctgcgccgtcggctcgacggcgcgcgccggtcgcgtgacaagcaagcc
gtggccgagcgcctcgccaccgacgtgaccgccgccgagctgcgcgtgcagcgccggcgc
gagagcgtgcccaagatcgagtaccccgaagagctgccggtcagcaagctcaaggacgag
atcggcaaggcgatcgccgagaaccaggtggtgatcgtcgcgggcgagaccggctcgggc
aagacgacccagctgccgaagatctgcctcgagctcggccgcggcatccgcgggcagatc
gggcacacgcagccgcggcggctggccgcgcgcacggtcgccgaccgcatcgcgagcgag
ctgaagaccgagctgggcgacgccgtcgggtacaaggtccgcttcaccgaccagtccggc
caggacacgctcgtgaagctgatgaccgacggcatcctgctcgccgagatccagaccgac
cggatgctgcgccagtacgacacgatcatcatcgacgaggcccacgaacgcagcctcaac
atcgacttcatcctcggctacgtcaagcagctgctgccgcgccggcccgacctcaaggtg
atcatcacctcggccacgatcgacccggagcgcttctcgaagcacttcgacaacgcgccg
atcgtcgaggtctccggccgcacctaccccgtcgaggtccgctaccggccgatcatcgac
cccgacgaccccgaggtcgaccccgatcgcgaccagacgcaggggatcctcgacgccgtc
atggaactgcagagcgccggccccggcgacgtgctggtgtttctctccggcgagcgcgag
atccgcgacacggcggatgcgctcaaccggctcgacctgcgcaacaccgaggtgctgccg
ctgtacgcgcggctgtcgtcggccgaccagcaccgcgtgttccagcgccacacggggcgc
cggatcgtgctcgcgacgaacgtcgcggagacgtcgctgaccgtgccgggcatcaagtac
gtcgtggacccgggcaacgcgcgcatctcgcgctacagccaccgcacgaaggtgcagcgg
ctgccgatcgaggcgatctcgcaggcctcggccaaccagcgcaaaggccgcagcggccgt
acgtccgacggcatctgcatccggctgtactccgaagaggacttcgagtcgcgcccggag
ttcacggacccggagatcctgcgcaccaacctcgcgtcggtgatccttcagatgacctcg
ctggggctgggcgacatggcggcgttcccgttcgtggagccgccggatcggcgccaggtc
gccgacggtgtgcagctgctgcaggagctcggcgcgttcgaggtggacgacgcgtcgaag
ctgacggacatcggccgcaagctcgcgcagctgccggtggacccgcggatggggcgcatg
gtgctggaggccgcgcgcaacgggtgcgtgcgcgaggtgatgatcatcgccgcggcactg
tccatccaggacccgcgggagcgtccggcggagaagcagcaggcggccgaccagcagcac
gcgcgcttcgccgacccgacgtcggatttcctcgcctacctcaacctgtgggagtacgtc
agcgagcagcagaaagcgttgacgggcaaccagttccgccggttgtgccgcaacgagtac
ctcaactacctgcgcatccgcgagtggcaggacatcttcagccagctgcgccagctggcc
aagccgctcgacatctcgttgagcaccacgccggccgacccgcagcacgtgcacacgtcg
ctgatcgccgggctgctctcgcacatcggcctcaaggacccggccaagggcgactacctc
ggcgcgcgcggcgcgcggttctcggtgttcccgggctcggcgctgttcaagaagcagccg
cgctgggtgatgtcggcggaactggtggagacttcgcggctgtgggggcgcgtgaacgcg
cgcatcgagccggagtgggtcgagccgctggccgcgcacgtcgtgaagcggtcgtattcg
gagccgcactgggagcgcaagcagggcgccgtgatggcggtggagaaggtgacgctctac
ggcgtgccgctcgtcgccgaccgacgcgtgaactacgggcgcatcgatcccgagctgtcg
cgtgagctgttcatccgccacgcgctggtggaaggcgactggcacaccaaccaccagttc
ttctccgagaatcgcgcgctgctcgacgaggtcgaggacctggagaaccgcgcccgccgc
cgcgacatcctcgtggacgacgagacgctgttcgagttctacgaccagcgtgtgccggcc
gacgtggtgtcggtgcgccacttcgacagctggtggaagaaggcgcggcgcggcgacccg
gacctgctgtcgttcgagaagtccatgctcatcaacgagaccgcgggaggcgtgcgcgag
tcggactaccccgactcgtggacgcagggctcgcaggtcttcgggctcacctaccagttc
gagcccggcgcggatgccgacggcgtcaccgtgcacatcccgctgcccgtgctgaaccag
gtgacgccggacgggttcgactggcaggtgccggggctgcgcttggaactggtcaccgcg
ctgatcaagtcgctgccgaaagccttgcggcgcaacttcgtcccggctcccgacacggcc
gcgtatgtcctttcgcgagtgtcgccttcggacggtccccttgtcgaggtgctgtccgac
gagctgttcacgcttcgccgcatcgacgttccactgtcggcctacgacctgtcttccgtg
ccggaccacctgcgggtgacgttccgcgtggtcgacgaccgcggccgcaaggtggccgag
ggcaaggacctggaggcgttgaagctcagcctcgccccgaaggtgcgcgagacgatttcg
aaggccgccaacagcatcgagaaggcggggctggtaaggccgactttcggctccctgcct
caggttttcgcctccacgcagcgcggccacgacgtgaaggcgtacccggctctggtggac
gagggtgcttcggtcgccgtccgcctgctggacaccccggcgcaacaacagcacgcgatg
tgggccggcacccggcgcatgctgcggctgaacctgaactcgccgatgaagttcatcacg
cggtcgctgtcgaactcctcgaagctcgtgctgaaccgcaacccgcacggcagcgtcgcc
gccctgctggaggactgcgtcgactgcgcagtggattcgttgatgacgtcgtacggcggc
ccggcttgggacgaggcgagtttcgcttcgctgctggagcacgtccgcgccggcttgaac
cccgctgtgctcgcggttctgacggacgtcgagcggatcctgcgcgcgaccatcgacgtg
gagtcagtcctgccggacacccgcggcccggccgagtcgttggcggacatgcgcgcccag
ctcgccggcctggtccacgcgggcttcgtgaccgagacgggcgcctcgcggctgcgtgat
gtcgagcgttacctgaggggcatctcgcgccgcttggacaaactcgtctccgagcccacc
cgcgacctgcagcgcaccgccgacatcgcgtggatcacggaggagtaccgggcggctctg
gccgcgctgcctgcggggacctcgtcgccctcgctgtcggaggtgcggtggatgatcgag
gaactccgggtgtccttcttcgcccagacgctcgggacggcgtatccggtgtcgctgaaa
cgcatcacgaaagctttggatgacgcgccggtgtga
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