Amycolatopsis sp. DSM 110486: K1T34_09010
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Entry
K1T34_09010 CDS
T10626
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1T34_09010 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyd03021
]
K1T34_09010 (rho)
03019 Messenger RNA biogenesis [BR:
amyd03019
]
K1T34_09010 (rho)
Transcription machinery [BR:
amyd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K1T34_09010 (rho)
Messenger RNA biogenesis [BR:
amyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K1T34_09010 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
QYN22595
LinkDB
All DBs
Position
complement(1869006..1871084)
Genome browser
AA seq
692 aa
AA seq
DB search
MSNTDLLSGDVETPAAAAETNGAAAAPKRRTGGLSGMVIAELRQLAGELGVGETTGMRKG
DLIAAIRERQGKTKKRTATAETLPLDGVGDTPAPKASKAAKTEEPARAEKKREETPSAEA
SAPKAETNGSAPAAEAPAEKPAQQERQDRDGGQQNSDGQQEEGGRSRRRRGSNRAAGAPD
GQREQREQRDGGQQRDGGQQRDGGQQRDGGQRGDREQRGDREQRGDRGDRAERQGGRDNN
RGGSDNRDSRDNRQRNNQQDSGNRGQQDNRSQGPEDDEEGGRRGRRFRDRRRRGSGGGRV
EGGSPDTEIREDDVLLPVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDA
ITGVVRQPRDGEQQRQKFNPLVRVDSINGLEPDEAKRRPDFTKLTPLYPNERLRLETESH
KLTTRVIDLIMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEE
VTDMQRSVKGEVIASTFDRPPADHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYN
LAAPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATAMVETGSTMDTVIFEEF
KGTGNAELKLDRKISERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQA
IDLLISRLRKTKTNIEFLMQVSKTALGANDED
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatctgttgagcggcgacgtggagacccccgccgcggccgctgagacg
aatggggccgcggccgctccgaagcgccgcaccgggggcctgtcggggatggtcatcgcc
gagctccgccagctggcgggcgaactgggtgtgggcgagaccacggggatgcgcaagggt
gacctgatcgccgcgatccgcgagcggcagggcaagaccaagaagcgcaccgccacggcg
gagactctcccgctcgacggcgtcggcgacactccggctcccaaggcctcgaaggccgcg
aagaccgaagagccggcccgggccgagaagaagcgcgaggagaccccgagcgccgaggcg
tcggctcccaaggccgagaccaacggttcggctccggcagccgaggcgccggccgagaag
cccgcgcagcaggagcgccaggaccgcgacggcggccagcagaactccgacgggcagcag
gaggaaggcggccgcagccgtcgtcgccgcggctcgaaccgtgccgcgggcgcgcccgac
ggccagcgcgagcagcgtgagcagcgtgacggtggccagcagcgtgacggtggccagcag
cgtgacggtggccagcagcgtgacggtggccagcgtggcgaccgtgagcagcgtggtgac
cgtgagcagcgtggcgaccgtggtgaccgcgccgagcgtcagggcggccgcgacaacaac
cgcggcggctcggacaaccgggacagccgcgacaaccgccagcgcaacaaccagcaggac
agcggcaaccgcggccagcaggacaaccgttcgcagggcccggaggacgacgaagagggc
ggccgtcgcggccggcgcttccgcgaccgccgtcgccggggcagcgggggcggtcgcgtc
gaaggcggttcgccggacaccgagatccgcgaggacgacgtcctgctgccggtcgccggc
atcctggacgtgctcgacaactacgcgttcgtgcgcacgtccggctacctcgccgggccg
aacgacgtgtacgtgtcgctctcgctggtccgcaagtacggcctgcgccgcggtgacgcc
atcaccggtgtcgtccgccagccgcgtgacggcgagcagcagcggcagaagttcaacccg
ctggtgcgcgtcgactcgatcaacggcctggagccggacgaggccaagcgccgccccgac
ttcaccaagctgaccccgctctaccccaacgagcgcctgcgtctcgagaccgagtcgcac
aagctcaccacccgcgtgatcgacctgatcatgccggtcggcaaggggcagcgcgccctg
atcgtgtcgccgccgaaggccggtaagaccacgatcatgcaggacatcgccaacgcgatc
accacgaacaaccctgagtgccacctcatggtcgtgctggtcgacgagcggccggaagag
gtcacggacatgcagcggtccgtgaagggcgaggtcatcgcctcgaccttcgaccgcccg
ccggccgaccacacctcggtcgcggagctctcgatcgagcgcgccaagcgcctggtcgag
atgggccacgacgtggtggtgctgctcgactcgatcacccgcctcggccgcgcctacaac
ctggccgcgcccgcgtcgggccggatcctgtccggtggtgtcgactcgacggcgctgtac
ccgccgaagcgtttcctgggtgccgcgcgcaacatcgagaacggcggctcgctcaccatc
ttcgccacggcgatggtggagacgggctccacgatggacacggtgatcttcgaagagttc
aagggcaccggcaacgccgagctcaagctcgaccgcaagatctccgagcgccgcgtgttc
ccggcggtcgacgtcaacccgtccggcacccgcaaggaagagctgctgctctcgccggac
gagctcgccgtcacgcacaagctgcaccgcgtgctccacgcgctggactcgcagcaggcc
atcgacctgctgatctcgcgcctgcgcaagacgaagaccaacatcgagttcctcatgcag
gtctcgaagacggccctcggcgcgaacgacgaggactga
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