Amycolatopsis sp. DSM 110486: K1T34_11695
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Entry
K1T34_11695 CDS
T10626
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1T34_11695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyd03400
]
K1T34_11695 (mfd)
Enzymes [BR:
amyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1T34_11695 (mfd)
DNA repair and recombination proteins [BR:
amyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K1T34_11695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QYN25916
LinkDB
All DBs
Position
complement(2427368..2430931)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSGLLQAILPDPALRGVVERAGAPLLELQGAVTARQLVAAALAEDESRGGAGRHVLAVTA
TGREADELTAALEALLGREKVVDFPSWETLPHERLSPRADTVGRRLEVLHRLHTGDDELK
VVVSTVRSLIQPMAPGLGSLDPVDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFAVR
GGILDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIQHVTAPPCRELLLTADVK
AKAAELAVTYEADAQLAEMLTKLADGIPVEGMEALIPVLCAGELTLLTDALPRGSHVLLA
DPEKIRARAHDLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRDLAEIAEHAQDTKRAWW
TITQLSSEDPDVYRVGVEAAPAYRGEFDRAMTDLRAHVAAGGTGVLVVAGHGTASRAVEQ
LTAAEVPAALAGEGITEAPRAGVVTVTCGALVDGFVSPERALVVLSEADLTGRGANAGTS
TKDLNAKMPSRRRNAVDPLALKAGDYVVHNQHGIGRFVEMVQRTVAGATREYLLLEYASS
KRGHPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQLY
AARQAAPGHPFGPDTPWQGELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVGY
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMQSFPVTIKGLSRFTHKAES
DQVLEQLAEGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVL
TMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAVRRELLRDGQV
FYVHNRVSSIEKAAKRIREMVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVE
TGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLAT
IAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGA
EPSEEEELAEVRVDLPIDAHIPHDYVEGERLRLEAYRKIAAAPDTAGLDAVREELIDRYG
LPPAPVNRLLAVAAFRHTCRAAGVTEVAVQGNTIRFAPLPLADSQMVRLKRLYPKALYKA
VTNTVSVPKPTEGPAGGRMGAPTLRDVELLEWCTKLLAQLTKTPAPV
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggactcctccaagccatcctccccgaccccgccctgcgcggggtcgtcgaacgc
gccggcgccccgctgctcgagctgcagggcgccgtgaccgcacgtcagctggtcgccgcc
gcgctcgccgaagacgaatccagaggcggcgcgggccgccacgtgctggccgtgaccgcc
accggccgggaggccgacgagctcaccgccgccctcgaagccctgctcgggcgcgagaag
gtcgtcgacttcccctcgtgggagacgctgccccacgagcgcctctcgccgcgcgccgac
accgtcgggcgccgcctcgaggtgctgcaccgcctgcacacgggcgacgacgagctcaag
gtcgtcgtctccaccgtccgcagcctgatccagcccatggcccccggcctcggctcgctc
gaccccgtcgacctggtcgtcggcgaggagcagagcttcgaaggcctgctggagcgcctg
gtcgagctcgcctacacccgcgtggacatggtcgagaagcgcggcgagttcgccgtgcgc
ggcggcatcctcgacctgttcgggcccaccgcgcagcaccccgtgcgcgtggagttctgg
ggcgacgaggtcagcgagatccgcgcgttcgcggtttccgaccagcgctccctgccgggc
gagatccagcacgtcaccgcgccgccgtgccgcgagttgctgctcaccgccgacgtcaag
gccaaggccgccgagctcgccgtcacgtatgaggcagacgcgcagctggccgagatgctc
acgaagctcgccgacggcatccccgtcgaaggcatggaagccctcattccggtgctgtgc
gccggcgagctcaccctgctcaccgacgccctgccgcgcggcagtcacgtgctgctcgcc
gacccggagaagatccgcgcccgcgcccacgatctcgtgcgcaccggccaggagttcctc
gaagcctcgtggaccacggccgcggcgggcgggcaggcacccatcgacctcggcgcttcg
gcctaccgcgatctggccgagatcgccgagcacgcgcaggacaccaagcgcgcctggtgg
acgatcacccagctgagcagcgaagaccccgacgtctaccgagtcggcgtcgaggccgcg
cccgcctaccgcggcgagttcgaccgcgcgatgaccgacctgcgcgcccacgtggccgcc
ggcggcaccggcgtgctcgtggtcgcgggccacggcacggccagccgcgccgtcgagcag
ctcaccgcggccgaggtcccggccgcgctggccggcgaaggcatcaccgaggccccgcga
gccggcgtcgtcaccgtcacctgcggagcccttgtcgacggcttcgtctcacccgagcgc
gccctcgtggtgctctcggaagccgacctcacgggccgcggcgccaacgccggaacgtcc
acaaaggacctcaacgccaagatgccgtcgcggcggcgcaacgccgtcgacccgctggcc
ctgaaggccggcgactacgtggtgcacaaccagcacggcatcggccgcttcgtcgagatg
gtgcagcgcaccgtcgccggcgccacgcgcgagtacctgctgctggagtacgcgagctcc
aagcgtggccacccgggcgaccgcctgttcgtgccgaccgaccagctcgacgaggtctcc
cgctacgtcggcggcgagctgcccacgctcaacaagctcggcggctccgactggaagaac
accaaggcgcgcgccaaaaaggccgtcaaggagatcgcggccgagctcgtgcagctctac
gccgcccgccaggccgcgcccggccaccccttcggccccgacacgccgtggcagggcgag
ctcgaagacgcgttcccgttcaccgagaccaacgaccagctcgccgccatcgacgaggtc
aaggccgacatggaacgcggcgtccccatggaccgcgtgatctgcggcgacgtcggctac
ggcaaaaccgagatcgccgtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtc
gccgtgctcgtgccgaccacgctgcttgcacagcagcacctgaacaccttcaccgagcgc
atgcagtcgttcccggtcaccatcaagggcctttcgcggttcacgcacaaggccgagtcc
gaccaggtcctggagcagctcgccgagggtgaggtcgacatcgtcatcggcacgcaccgc
ctgctgcagaccggcatccggtacaaggatctcggcctcgtgatcgtcgacgaggagcag
cgcttcggcgtggagcacaaggaacacatcaaggccctgcgcacccacgtggacgtgctc
acgatgtcggccacccccatcccgcgcacgctggagatgtcgctcgccggcatccgcgag
atgtccaccatcctcaccccgccggaagaccggcacccgatcctgacgtatgtcggcggc
tacgacgacaagcaggtcggcgccgccgtccgccgcgagctcctgcgcgacggccaggtc
ttctacgtccacaaccgcgtctcctccatcgagaaggccgccaaacgcatccgcgagatg
gtgcccgaagcgcgcgtcgtgaccgcccacggccagatgaacgaggacaagctcgaaaag
atcatccagggcttctgggaaaacgagtacgacgtgctcgtctgcaccacgatcgtcgaa
accggcctggacatctccaacgccaacaccctcatcgtcgaacgcggcgacctactggga
ttggcccagctccaccagctgcgcggacgcgtcggccgcggccgcgaacgcggctacgcc
tacttcctgtacccgccggaagcgccgttgacggagaccgcgcacgacaggctcgcgacc
atcgcgcagaacaccgagctcggcgcgggcatggccgtcgcgatgaaggacttggagatc
cgcggcgcgggcaacatcctcggcgccgaacagtccggccacatcgcgggcgtcggcttc
gacctgtacgtgcgcctggtcggcgaagctgtcgaagccttccgccgccacgccggcgcc
gagcccagcgaagaggaggaactcgccgaagtccgcgtcgacctccccatcgacgcccac
atcccccacgactacgtcgaaggcgaacggttgcggttggaggcctaccgcaaaatcgcg
gccgcgcccgacaccgcgggcctcgacgccgtgcgcgaagaactcatcgaccgttacggc
ctgccgcccgcccccgtcaaccgtctgcttgcggtggctgccttccgccacacctgccgc
gcggcgggcgtcacggaggttgccgtgcagggcaacaccatccgcttcgcgccattacca
ctcgccgattcgcaaatggtgcggctgaaacgcttgtaccccaaggcgctgtacaaggcg
gtgaccaacaccgtctccgtgcccaaacccaccgaaggcccggccggcggccgcatgggc
gcgccgacactgcgcgatgtcgaactgctcgagtggtgcacgaagctcctggcgcagctc
acgaaaacccccgcgcccgtgtga
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