Amycolatopsis sp. DSM 110486: K1T34_15200
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Entry
K1T34_15200 CDS
T10626
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amyd Amycolatopsis sp. DSM 110486
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyd03016
]
K1T34_15200
Enzymes [BR:
amyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K1T34_15200
Transfer RNA biogenesis [BR:
amyd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K1T34_15200
Prokaryotic type
tRNA splicing ligases
K1T34_15200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QYN23674
LinkDB
All DBs
Position
complement(3120489..3121679)
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AA seq
396 aa
AA seq
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MYTAVDGARVPIRMWADPTSVEEQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLGRLRRRIESAVPVGFGLHKTPVNPAK
VHGVGAWDAFWKSFGDLHEGVQGLHDRAARQVGSLGGGNHFIEVCLEQGGADEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMAAYRRDLFWAQDYAARN
RATMVALVKLAVAEVIPGTTFDDAISCHHNYVAEETYDGVDLLVTRKGAIRAGAGDLGII
PGSMGTGSYIVRGLGNTASFESASHGAGRRMSRTKARKTFTAADLAAQTDGVECRKDTGV
VDEIPAAYKDIDAVIEAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtagacggtgctcgcgtcccgatccggatgtgggccgaccccacgtcg
gtcgaggaacaagccatgcgccagctgcacaacgtcgccaatctgccttgggtgcacggc
gtcgcggtgatgccggacgtccactacggcaagggcgccaccgtgggcagcgtgatcgcc
atgcgtgacgcggtgtcgccggcggcggtgggcgtcgacatcgggtgcgggatgagtgcg
gtgcgcacgtcgctgaccgcggcggacctgcccgacgacctcggccggctgcggcggcgg
atcgagtcggccgtgccggtggggttcgggctgcacaagacgcccgtgaaccccgcgaag
gtccacggcgtgggcgcctgggacgcgttctggaagtcgttcggcgacctccacgagggc
gtgcagggcctgcacgaccgcgcggcgcgccaggtcggaagcctcggcggtgggaaccac
ttcatcgaggtctgcctcgaacagggcggcgccgacgagggccgcgtgtggctgatgctg
cactcgggttcgcgcaacatcggcaaggagctcgcggagcggcatatggccgtggcgcgc
aagctgccgcacaacgcggacctgcccgaccgcgacctggccgtgttcgtcgcgggcacg
cccgagatggcggcctaccggcgtgacctgttctgggcgcaggactacgcggcgcgcaac
cgggccacgatggtggcgctggtcaagctcgccgtcgccgaggtgatcccggggaccacg
ttcgacgacgcgatcagctgccaccacaactacgtcgccgaggagacctacgacggcgtc
gacctgctcgtgacccgcaagggcgcgatccgggccggcgcgggtgacctcgggatcatc
ccgggcagcatgggcaccggctcgtacatcgtgcgcgggctcgggaacacggcgtcgttc
gagtcggcttcgcacggcgcggggcggcggatgtcgcggacgaaggcgcgcaagaccttc
accgcggccgacctcgcggcccagaccgacggcgtcgagtgccgcaaggacaccggcgtg
gtcgacgagatcccggcggcctacaaggacatcgacgcggtgatcgaggctcagaccgat
ctcgtggaggtcgtggcgcacctcaagcaggtcgtctgcgtgaaggggtga
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