Amycolatopsis sp. DSM 110486: K1T34_24175
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Entry
K1T34_24175 CDS
T10626
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd03420
Nucleotide excision repair
amyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1T34_24175
03430 Mismatch repair
K1T34_24175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyd03400
]
K1T34_24175
Enzymes [BR:
amyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1T34_24175
DNA repair and recombination proteins [BR:
amyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1T34_24175
MMR (mismatch excision repair)
Other MMR factors
K1T34_24175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Replic_Relax
NYN
Motif
Other DBs
NCBI-ProteinID:
QYN25258
LinkDB
All DBs
Position
4940246..4943668
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AA seq
1140 aa
AA seq
DB search
MSLRLIANPVEPAEIADALGLHRPTPEQATVIASPVEPSLVVAGAGAGKTETMAARVVWL
VANGIVSPERVLGLTFTRKAARQLGERVRARLRRLAGSGLLEKLDPSGGLRATVVAGEPT
VLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDDDLDTDRVPSSVTAQ
LLALAGELGEHLVSTERLAQYTTWLCEVIENAPRAKGQRTALPQKLQEVMAAQRFRLALL
PLVEAYHRRKRAEGALDFADQMSLAAQLADGYPAVITGERERYGAVLLDEYQDTGHAQRV
LLRSLFGGGDHAPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRHAEGRLAPAHEFGL
LTSFRNPPQILDLANAVAEPLRARGLGVEPLRAREGAGPADIAVALLPDVRAEREWVADA
LARRWLAEKEETGKPPTAAVLVRRRADMAPIAAELRMRGLPVEVVGLGGLLDEPEVADLV
STLRVLADPLAGSAAARLLTGARWRLAAADLAALWRRAGELSSPVPQADSEDEPVLVTER
AEQAGLIDAVDEPGKPERYSADGYRRIRRIGSELAALRRRLDQSLPELVADVERTMLLDV
ESLARPGSAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVEVVPD
RVQVLTVHSAKGLEWEVVAVPHLVAEVFPSKRRSSSWLRTATSLPALLRGDSADLPELRV
SDGFDRKEVQEALELHEEGFVEREADEERRLCYVALTRSERALIVSGHWWNESSTRAKGP
SVFLTEIADVLRAAEPPIGVLDAWADEPAEDEENPLVADSRKASWPVDPLGDRRTGVSTG
VEMVFAAMAALPEAPEETEPAPVKAEPEQPELFDVAEDDEVPLPPEPDEFDEEPYADEET
YEEDAEDDEDEVDPEDPDGWAADTDVLLAERARAQATVDRVVLPTQLSVSQLVELAADAE
ALARKLRRPLPLPPNTFVRRGTAFHTWLEQRFSGEGLLEIDDLPGAADVGEAPDSDFEVL
QEAFERSEWAERVPLAVEVPFSADVEGITVRGRMDAVYADPDGGWTVVDWKTGSVPSADR
LPALAVQLGAYRLAWAALKNVPVDRVRAAFHYVRHGHTLSPADLLDAEGLRDLLRRVPRE
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttgcggctcatcgccaacccggtcgagcccgcggagatcgccgacgcactgggc
ctgcaccgcccgacccccgagcaggccacggtcatcgcctcgcccgtggagccgtcgctg
gtcgtcgcgggcgccggtgcgggcaagacggagacgatggccgcgcgcgtggtgtggctg
gtggccaacgggatcgtgagccccgaacgcgtgctgggcctgacgttcacccgcaaggcc
gcgcgccagctcggcgagcgcgtgcgcgcccggctgcgccgcctggccgggtccgggctg
ctggagaagctcgacccgtcgggcgggttgcgcgccacggtcgtcgccggtgagcccacc
gtgctgacctatcacgcctacgccgggcggctgttgtcggagcacggcctgcggctgccg
gtgcagccgggcgtgcggctgctttcggagacgtcttcgtggcagctcgcgcaccgcgtg
gtgtccacttgggacgacgacctcgacaccgaccgcgtgccgtcctcggtcacggcgcag
ctgctcgcgctggccggggagctcggcgagcacctcgtgtcgaccgaacggctcgcccag
tacacgacgtggctgtgcgaggtgatcgagaacgctccgcgcgccaagggccagcggacg
gcgctgccgcagaagctgcaggaagtgatggctgcgcaacggttccggctcgcgctgctg
ccgctcgtcgaggcctaccaccggcgcaagcgggccgagggcgcgctcgacttcgccgac
cagatgtcgctcgcggcgcagctggccgacggctacccggccgtgatcaccggtgaacgc
gagcgctacggcgccgtgctgctcgacgagtaccaggacaccggccacgcgcaacgcgtg
ctgctgcggtcgctgttcggcgggggagaccacgcgccgatgccggtcaccgccgtcggc
gacccggcgcaggccatctacggctggcgtggcgcttcggccgccaacctgccgcgcttc
accaccgacttcccgcgccacgccgaagggcggctcgcgcccgcgcacgagttcggcctg
ctcacgagcttccgtaacccgccgcagatcctggacctggccaacgccgtggccgagccg
ttgcgggcgcgcggcctcggcgtcgagccactgcgggcgcgtgagggcgccggcccggcc
gacatcgccgtggcactgctgccggatgttcgagccgaacgcgagtgggtggccgacgcg
ctggctcggcgctggctcgccgagaaagaggagacgggcaagccgccgacggccgccgtg
ctggtgcgccggcgcgcggacatggcgccgatcgcggccgagttgcggatgcgcgggctg
ccggtcgaggtcgtcggtctcggcgggctgctcgacgaaccggaggtcgccgacctcgtc
agcacgctgcgggtgctggccgacccgctcgccggcagcgcggcggcccgcctgctcacg
ggcgcgcgctggcggctcgcggcggcggacctggccgcgctgtggcggcgcgcgggggag
ctgtcttcgcccgtgccacaggcggattccgaagacgaacccgtgctggtcaccgaacgc
gccgagcaggccgggctcatcgacgccgtcgacgaacccggcaagcccgagcgctactcc
gcggacggctaccggcgaatccggcgtatcggctcggagctggcggcgttgcggcggcgc
ctcgaccagtcgttgcccgagctggtggccgacgtcgaacgcacgatgctgctcgacgtc
gagtccctcgcccggccgggctcggccggccgcgcgcacctcgacgcgttcgcggaggtc
gtcaccgattacgccgagaccgcgccgaccgcgacccttctgtcctttgtggactacctc
aacaccgctgcccacgccgaagacggcctcacgcccggcgaggtcgaggtcgtgcccgac
cgcgtgcaggtgctcaccgtgcactccgccaaggggctggagtgggaggtcgtggccgtg
ccgcacctcgtcgcggaggtgttcccgagcaagcgccggtcctcgtcgtggctgcgcacg
gcgacgtcgctgcccgcgttgctgcgcggcgactcggccgacctgcctgagctgcgcgtt
tccgacggcttcgaccgcaaggaggtgcaggaggccctcgaactgcacgaggagggtttc
gtcgagcgggaggccgacgaggaacgccggctctgctacgtcgcgttgacgcggtcggaa
cgcgcgctgatcgtgtccggtcactggtggaacgaaagcagcacgcgcgcgaagggaccg
tcggtgttcctcacggagatcgccgacgtgctgcgcgcggccgaaccgccgatcggcgtg
ctcgacgcgtgggccgacgagcccgccgaggacgaggagaacccgctggtcgcggactcc
cgcaaggcgagctggcccgtcgacccgctgggcgaccggcggaccggggtgtcgacgggc
gtcgagatggtgttcgcggcgatggcggcgctgcccgaagcacccgaagagacagaacct
gcgccggtgaaggccgaacccgagcagccggaactgttcgacgtcgccgaagacgacgag
gtgccgctcccgcccgaacccgacgagttcgacgaagaaccttacgcggacgaagaaacc
tacgaggaagacgccgaagacgacgaagacgaggtcgaccctgaagaccccgacggctgg
gccgccgacaccgacgtgctgctcgccgaacgcgcccgcgcccaggccactgtggaccga
gtcgtactccccacccagctttccgtgagccagctcgtggagctcgccgccgacgccgaa
gcgctcgcccggaagctacgacgcccgcttccgttgccgcccaacaccttcgtccgccgc
ggcaccgcgttccacacctggctcgaacagcgcttctccggcgagggcctgctggagatc
gacgacctgcccggcgccgccgacgtcggcgaggcccccgactccgatttcgaagtactg
caagaagccttcgaacgcagcgagtgggccgagcgcgtgccgctggccgtggaggtgccg
ttctcggccgacgtcgagggcatcaccgtgcgcggccggatggacgccgtctacgcggat
cccgacggcggctggaccgtggtggactggaaaaccggctccgtcccgtcagccgaccgc
ctgcccgcgctggccgtgcagctcggcgcgtaccggctcgcgtgggcggcgctgaagaac
gtgccggtggaccgcgtgcgcgccgcgttccactacgtccgccacgggcacacgctcagc
cccgccgacctcctggacgccgaaggcctgagggacctgctccgccgtgtcccgcgcgaa
tga
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