Amycolatopsis sp. DSM 110486: K1T34_24940
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Entry
K1T34_24940 CDS
T10626
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amyd Amycolatopsis sp. DSM 110486
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyd03019
]
K1T34_24940 (hrpB)
Enzymes [BR:
amyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K1T34_24940 (hrpB)
Messenger RNA biogenesis [BR:
amyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K1T34_24940 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_19
AAA_30
AAA_22
nSTAND3
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYN25387
LinkDB
All DBs
Position
complement(5109980..5112403)
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AA seq
807 aa
AA seq
DB search
MSRLENLPDLPVRAVLPDVLAALADHGTAVLVAPPGTGKTTLVPLALEHGGGRVVVAEPR
RLAARAAASRMAALLGEPVGETVGYSVRGDRKVSARTRIEVVTSGLLVRRVQNDPELAGV
STVLLDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVAAGRLAELLGDAPVVTAH
ARTYPVELTYRVPARGARIEATVASTIRLALSEGDGDVLAFLPGAGEIARTTAQLGSLHA
DVLPLHGRLTAARQDDALRPRDRRRVVLATAVAESSLTVPGVRSVVDSGLARVPRVDHRR
GLAGLATVRVSAAVAEQRAGRAGREAPGRAYRCWPEHEQATLPAYPEPEIRTAELARFAL
ELACWSTPDGSALAWWDPPGEGALAAARTLLVTLGATTADGTITPRGRRMADLGLHPRLA
RALLDGSAAVGTRVAAEVVALLDAGAQLTDVEAELRRLRGGTDDAARRWKTEVRRLSGLV
KSPGNAGKPDAALVVALAHPERLARRRPGNAPVYLMAGGTAAELPAGGGLGDSEWLAVGE
ATRDPGRVQGTIRLAAVADETLAVRAAPALVSEVDEVAWDGDVVARHVRRLGAIVLAERP
LRSPKPQLVHEALVTGLRTEGLSLLRWSEDGRSLRERMAFLHRVLGAPWPAVDDDTLLSE
VDTWLDLSRARRRADLATVDAGSALRGLLPWPEAAHLDELAPDRLEVPSGSHYRVDYTAD
QPVLAVKLQETFGWTATPTVADGRVPVLLHLLSPAGRPAAVTADLESFWRTGYAAVRADL
RGRYPKHPWPEDPATATPTRHTTRRSR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgcctggaaaacctgcccgacctgcccgtgcgcgcggtgctgcccgacgtgctg
gcggcgctcgcggaccacggcaccgccgtgctggtcgcgccgcccggcaccggcaagacc
acgctcgtgccgctcgcgctggagcacggcgggggccgtgtcgtggtcgccgaaccgcgc
cgcctggccgcccgcgccgcggcttcgcggatggccgcgctgctgggtgaaccggtgggc
gagacggtcgggtactccgtgcgcggcgaccgaaaggtgtctgcgcgcacccggatcgaa
gtcgtgacgtccggcctgctcgtgcggcgcgtgcagaacgaccccgagctggccggcgtg
tcgacggtgctgctcgacgagtgccacgaacgccacctcgacgccgacctgctgctcgcc
ctcctgctcgacgtccgcgccggcctgcgcgacgacctgcggctgctcgcgacgtcggcg
accgtcgccgccggacggctcgccgagctgctcggcgacgcacccgtggtgaccgcgcac
gcccgcacctaccccgtcgagctcacctaccgcgtgcccgcccgcggcgcgcggatcgag
gccacggtggcgtcgacgatccggctggcactgtccgaaggggacggtgacgtgctcgcg
ttcctgcccggcgcgggggaaatcgcgcgtacgaccgcgcagctgggctcactccacgcc
gacgtgctgccgctgcacggccgcctcaccgccgcccgccaggacgacgcgttgcggccc
cgtgaccgccggcgcgtggtgctggccacggccgtcgcggagtcgagcctcaccgtgccc
ggcgtgcggtccgttgtggactccgggctggcccgcgtgccgcgagtggatcaccggcgc
ggcctcgccgggctggcgaccgtgcgcgtgtccgcggccgtcgccgagcaacgagccgga
cgcgcgggccgcgaagcacccggccgcgcgtaccgctgctggccggagcacgagcaggcg
acactgcccgcgtaccccgagccggagatccgcacggccgagctcgcgcggttcgcgctg
gagctcgcgtgctggtccaccccggacggcagcgccctcgcctggtgggacccgccgggc
gagggcgcgctggccgccgcccggacgttgctggtcacgctgggcgcgacgaccgccgac
ggcaccatcaccccgcgcggacgccggatggccgacctcggcctgcacccgcggctcgcc
cgcgcgctgctcgacggatccgccgcggtgggtacgcgggtggccgccgaggtcgtggcc
ctcctcgacgcgggagcgcagctgaccgacgtcgaggccgagctgcggcgcctgcgcggc
ggcacggacgacgcggcgcggcggtggaaaacggaggtccggcggctttcgggcttggtg
aaatcccctggcaatgcgggcaaacccgacgccgcgttggtcgtcgccttggctcacccc
gaacggctcgcgaggcgtcggccgggaaacgcacccgtgtacctcatggccggcggtacc
gcggccgagctcccggcgggcggcggtctcggcgactccgaatggctggccgtcggcgaa
gccacgcgcgaccccggccgcgtgcagggcacgatccggctcgccgccgtcgccgacgaa
accctcgccgtgcgggccgcgcccgccctggtgtccgaagtggacgaagtcgcgtgggac
ggcgacgtggtggcccgacacgttcgccgcctcggcgccatcgtgctcgccgaacgcccg
ctgcggtcgccgaagccgcagctggtgcacgaagccctggtcaccggcctgcgcaccgaa
ggcctgagcctgctgcgctggagcgaagacggccggagcctgcgtgagcggatggcgttc
ctgcaccgcgtgctcggcgccccgtggccggccgtcgacgacgacactctgctgtccgaa
gtagacacctggctcgacctctcccgcgcccgccgccgcgcggacctcgccacggtcgac
gccggcagcgccctgcgcggcctgctgccgtggcccgaagccgcgcacctcgacgagctg
gcgcccgaccgcctcgaagtcccgtccggctcccactaccgcgtggactacaccgccgac
cagcccgtgctcgcggtgaagctgcaggagaccttcgggtggacggccaccccgaccgtc
gccgacggccgcgtcccggtgctgctgcacctgctctcccccgccggccggcccgccgcc
gtgacggccgacctggagtcgttctggcgcaccgggtacgcggccgtgcgcgccgacctg
cgtggccgttacccgaagcacccctggcccgaggaccccgcgacggccacgccgacgcgc
cacaccacccgccggtcgcgctga
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