Amycolatopsis sp. DSM 110486: K1T34_27520
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Entry
K1T34_27520 CDS
T10626
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd00260
Glycine, serine and threonine metabolism
amyd00630
Glyoxylate and dicarboxylate metabolism
amyd00670
One carbon pool by folate
amyd00785
Lipoic acid metabolism
amyd01100
Metabolic pathways
amyd01110
Biosynthesis of secondary metabolites
amyd01200
Carbon metabolism
Module
amyd_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
K1T34_27520 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
K1T34_27520 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
K1T34_27520 (gcvP)
00670 One carbon pool by folate
K1T34_27520 (gcvP)
Enzymes [BR:
amyd01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
K1T34_27520 (gcvP)
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Gene cluster
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Motif
Pfam:
GDC-P
GcvP2_C
Aminotran_5
Beta_elim_lyase
SepSecS
Aminotran_1_2
Motif
Other DBs
NCBI-ProteinID:
QYN16627
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Position
5664648..5667536
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AA seq
962 aa
AA seq
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MTEGEFPAHRCARCPARGAPITSTPFDARHIGPAEAERAKMLAECGYGSLDALVESAVPS
AIRARDLDLPAAASEEEATAELRALAALNRPMTQMIGLGYSDAVTPGVIRRNVLENPAWY
TAYTPYQPEISQGRLEALLNFQTMVADLTGLTTANASMLDESTAVAEAMTLMRRSSKSKS
NVIVLDAECLPQTIAVVRTRAAALGIDVQVRDLLTGFPEEFFGVVVQYPGASGVLRGRGF
YHAISEAAKAAGALYTVAADLLALTLITSPGEFGADVAAGSTQRFGVPLGYGGPHAGYLA
VRAGLERSLPGRLVGVSVDADGNMAYRLALQTREQHIRREKATSNICTAQVLPAVLAAMY
GVYHGPGGLKAIATRVHELAAGFAAALRAGGVEVVHESFFDTVVAHVPGRAAEVHAAARE
AGINLGHVDADHVRVACDEITRPDILAQVLRAFGVDAEGAAATALPSGIVRESGFMAHEV
FSTHRSETSMLRYLRKLADLDYALDRGMIPLGSCTMKLNATTEMEPISWREFAGIHPFAP
AEDAEGYHRLVAQLSGWLAEVTGYDEVSLQPNAGSQGELAGLLAIRGYHHANGQPEREVC
LIPSSAHGTNAASAVLAGMRVVVVKCTDEGNVDLEDLQAKVDANRETLAAIMVTYPSTHG
VYEHGIERLAKIVHDGGGQVYVDGANLNALLGLAKPGEFGGDVSHLNLHKTFCIPHGGGG
PGVGPVAVRAHLAPYLPNHPLLDAAGPATGVGPISGAPYGSASILPISWAYVRMMGAPGL
TAATKVAVLAANYVAARLSPHYPVLYTGQDGLVAHECILDLRGITKDTGVTVDDVAKRLI
DYGFHAPTMSFPVAGTLMVEPTESEDLGEIDRFCAAMIAIRHEIDQVAAGHWTAETSPLR
AAPHTAETLVGEWTADYDRELAVYPAGVSRKNKYWPPVRRIDGARGDRNLVCSCPPLNAY
EG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgacagagggggagttcccagcgcaccgctgtgcccggtgcccggcaagaggagctccc
atcacctccacaccgttcgacgcccgccacatcggccccgccgaggccgagcgggccaag
atgctcgccgaatgcggttacggaagcctggacgccctcgtggagtcggccgtcccgtcc
gccatccgcgcccgtgacctggaccttcccgccgcggcgtccgaagaggaagccaccgcg
gagctgcgcgcgctcgcggcgctcaaccgcccgatgacgcagatgatcggcctcggctac
tccgacgccgtcacaccgggcgtgatccgccgcaacgtgctcgagaaccccgcgtggtac
accgcctacacgccgtatcagccggagatctcccagggccggctcgaagccctgctgaac
ttccagacgatggtcgccgacctcacgggcctgaccacagccaacgcgtcgatgctcgac
gagtcgaccgccgtcgccgaggccatgacgctgatgcggcgctcgtcgaagtcgaagtcc
aatgtgatcgtcctcgacgccgaatgcctgccgcagacgatcgcggtcgtgcgcacgcgc
gccgccgcgctcggcatcgacgtgcaggtgcgcgacctgctcaccgggtttccggaagag
ttcttcggcgtcgtcgtgcagtacccgggcgcttcgggtgtgctgcgaggccgcggcttc
taccacgccatttccgaggccgcgaaggccgcgggcgccctgtacacggtggccgccgac
ctgctcgcgctcacgctgatcacctcgccgggcgaattcggcgccgacgtcgccgcgggt
tcgacgcagcgcttcggcgtgccgctgggctatggcggcccgcacgcgggctacctggcc
gtgcgcgccgggctcgagcgttcgctgccgggccggctggtgggcgtgtccgtggatgct
gacgggaacatggcgtaccggctcgcgctgcagacgcgggagcagcacatccgccgcgag
aaggcgacgtcgaacatctgcaccgcgcaggtgctgccggccgtgctggccgcgatgtac
ggcgtgtaccacggcccgggcggcctgaaggccatcgcgacccgcgtgcacgagctggcg
gcgggcttcgccgcggccctgcgcgccggtggcgtggaggtcgtgcacgaatcgttcttc
gacacggtcgtcgcgcacgttccgggccgcgccgccgaggtccacgcggccgcgcgcgag
gcgggcatcaacctcgggcacgtcgacgccgaccacgtgcgcgtggcctgcgacgagatc
acccgcccggacatcctcgcgcaggtgctgcgcgcgttcggtgtggacgccgaaggggcc
gctgccaccgcgctgccgagtggcatcgtgcgcgaaagcggcttcatggcccacgaggtg
ttcagcacgcaccgctccgagacgtcgatgctgcgctacctgcgcaagctcgccgacctg
gactacgcgctcgaccgcggcatgatcccgctgggctcgtgcacgatgaagctcaacgcc
accaccgagatggagccgatcagctggcgcgagttcgcgggcatccacccgttcgcgccg
gccgaggacgccgagggctaccaccggctcgtggcgcagctgtcgggctggctcgccgag
gtgaccggctacgacgaggtttccctgcagcccaacgccggcagtcagggcgagctcgcg
ggcctgctcgccatccgcggctaccaccacgcgaacggccagccggagcgcgaggtctgc
ctgatcccgtcgtccgcgcacggcaccaacgcggcttcggcggtgctcgcgggcatgcgc
gtggtcgtggtgaagtgcaccgacgagggcaacgtcgacctcgaagacctgcaggccaag
gtggacgcgaaccgcgagacgctcgcggcgatcatggtcacctacccgtccacccacggc
gtgtacgagcacggcatcgagcggctcgccaagatcgtgcacgacgggggtggccaggtg
tacgtggacggcgcgaacctcaacgcgttgctgggcctggcgaagccgggcgagttcggc
ggcgacgtgtcgcacctgaacctgcacaagacgttctgcatcccccacggcggtggcggc
cccggcgtcggcccggtcgcggtgcgcgcgcacctcgcgccgtacctgccgaaccacccg
ctgctcgacgccgcgggcccggcaaccggcgtcggcccgatcagcggcgcgccctacggc
tcggcgtcgatcctgccgatctcgtgggcgtacgtgcgcatgatgggcgcgcccggcctc
acggcagccacgaaggtcgcggtgctcgccgcgaactacgtcgccgcccgcctgtcgccg
cactacccggtgctctacaccgggcaggacggcctggtcgcgcacgagtgcatcctcgac
ctgcgcggcatcaccaaggacaccggcgtgaccgtcgacgacgtcgcgaagcggctcatc
gactacggcttccacgcaccgacgatgtcgttcccggtcgcgggcacgctcatggtggag
cccaccgagagcgaggacctcggcgagatcgaccgcttctgcgccgcgatgatcgccatc
cgccacgagatcgaccaggtcgcggccgggcactggaccgcggagacgagcccgctgcgc
gccgccccgcacacggcggagacgttggtgggcgagtggaccgccgactacgaccgtgag
ctggcggtgtacccggcgggtgtgtcgcgcaagaacaagtactggccgccggtgcgccgg
atcgacggggcgcgcggtgaccgcaacctcgtctgctcctgcccgcccctcaacgcgtac
gaaggctga
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