Amycolatopsis sp. EV170708-02-1: MJQ72_28165
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Entry
MJQ72_28165 CDS
T10873
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amye Amycolatopsis sp. EV170708-02-1
Pathway
amye03030
DNA replication
amye03430
Mismatch repair
amye03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MJQ72_28165 (dnaE)
03430 Mismatch repair
MJQ72_28165 (dnaE)
03440 Homologous recombination
MJQ72_28165 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amye03032
]
MJQ72_28165 (dnaE)
03400 DNA repair and recombination proteins [BR:
amye03400
]
MJQ72_28165 (dnaE)
Enzymes [BR:
amye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MJQ72_28165 (dnaE)
DNA replication proteins [BR:
amye03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MJQ72_28165 (dnaE)
DNA repair and recombination proteins [BR:
amye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MJQ72_28165 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Stork_head
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UMP00356
LinkDB
All DBs
Position
complement(6229650..6233234)
Genome browser
AA seq
1194 aa
AA seq
DB search
MSNDSFVHLHVHTEYSMLDGAAKIAPLFKEAARLGMPAVGMTDHGNMYGADEFYQQAVKH
DLKPIIGIEAYIAPESRFHKKPVFWGQSNQRGADEFGEGGDVSGGGAYTHMTMLAENSTG
LRNLFKLSSLASMQGYYRKPRMDRELIAENHHGIIATTGCPSGEVQTRLRLGQRTEAIQA
ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLRPLATNDSHYVTKDQADTH
SALLCVQAGKTLNDPNRFKFDGDGYYLKSAADMREYWDKEVPGAADSTLLIAERVESYKD
VYTHKDRLPFFEVPEGYDQGTWLREEVARGLKWRYPDGVPDPYYNERIEIELDVIIGKGF
PAYFLIVADLINYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFERFLNPERV
SMPDIDIDFDDRRRGEMIRYATEKYGVDKVAQVITFGTIKTKAAIKDSARVHFGQPGYAI
ADRISKALPPPIMAKDIPLSGIVDSKHERYGEAAEVRALVETDEECKTIFETARGLEGLI
RNAGVHACAVIMSCDPLTDAIPLWQRDDGSIITGWDYPSCEAIGLLKMDFLGLRNLTVIG
DAIDNIKANRGIDIDLDTLGVEDPETYKLLSRGDTLGVFQLDGGPMRDLLRRMQPTVFDD
IVAVGALYRPGPMGMNAHNDYADRKNARQKVKPIHPELEEPLKEILADTYGLIVYQEQIM
HIGQKVAGYSMGRADVLRRAMGKKKAEVLEKEFVGFEEGMKSSELVPGGFSSEAIKALWD
TILPFAGYAFNKSHAAAYGLISYWTAYLKANFTPEYMAALLTSVGDNKDKSAVYLSECRR
LGIKVLPPDVNESALRFAAVGEDIRFGMGAVRNVGANVVESIIKTREEKGKYSSFTDFLD
KSELVACNKRVIESLIKAGGFDSLGNTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGFG
GDDDAEAAASSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERILRKHAPRP
IAAILADPPKEGELVVSGLITSLERRVNKKGEPWAICTIEDMDASLEVLYFPKSYAMFSA
DLIEDNAVLVKGRVNWREDKMSIFGGGLVPLDLSEVGNGEDDLPLVLLAAAEKIDQSVVS
ELKQTLLAHKGETPVHLKLVGKNQTVFALYDYPVKVTSMLIGELKGIPGIAAST
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaacgattccttcgtccacctgcatgtgcacaccgagtactcgatgctcgacggt
gcggcgaagatcgcccccttgttcaaggaggcggcgcgcctgggcatgcccgcggtcggc
atgaccgaccacggcaacatgtacggcgcggacgagttctaccagcaggcggtcaaacac
gacctcaaaccgatcatcggcatcgaggcctacatcgcgccggagagccgcttccacaag
aagccggtcttctgggggcagtcgaaccagcgcggcgccgacgagttcggtgagggcggt
gacgtctccggtggtggtgcgtacacccacatgacgatgctcgccgagaactccaccggc
ctgcggaacctgttcaagctctcgtcgctcgcgagcatgcagggctactaccgcaagccc
cggatggaccgcgagctgatcgcggagaaccaccacggcatcatcgcgaccaccggctgc
ccctcgggcgaggtgcagacgcgcctgcggctggggcagcgcaccgaggcgatccaggcg
gcgtcggactacaaggacatcttcggcgccgacaacttcttcctcgagctgatggaccac
gggctgccgatcgagcggtcggtccgtgaaggcctgctcgagatcggcaagctgctcgac
ctccggccgctggccaccaacgactcgcactacgtcaccaaggaccaggccgacacccac
tccgcgctcctgtgcgtgcaggcgggcaagaccctgaacgacccgaaccgcttcaagttc
gacggtgacggctactacctgaagtccgccgccgacatgcgcgagtactgggacaaggag
gtccccggcgccgccgactcgacgctgctgatcgccgagcgcgtcgagtcctacaaggac
gtgtacacgcacaaggaccggctgccgttcttcgaggtccccgagggctacgaccagggc
acctggctgcgggaagaggtcgcccgcggcctcaagtggcggtacccggacggcgtgccg
gacccgtactacaacgagcgcatcgagatcgagctcgacgtcatcatcgggaagggcttc
cccgcctacttcctcatcgtcgccgacctcatcaactacgcccgcaaggtcggcatccgc
gtcggccccggccgtggttccgccgccggctcgctggtcgcgtacgtcctcggtatcacc
aacctggacccgatcccgcagaagctgctgttcgagcggttcctgaaccccgagcgcgtc
tcgatgcccgatatcgacatcgacttcgacgaccgccgtcgcggcgagatgatccgctac
gccaccgagaagtacggcgtcgacaaggtcgcgcaggtcatcaccttcggcaccattaag
accaaggcggccatcaaggactccgcccgcgtccacttcggccagccggggtacgcgatc
gcggaccggatctcgaaggcgctcccgccgccgatcatggcgaaggacatcccgctctcg
ggcatcgtcgactcgaagcacgagcgctacggcgaagcggccgaggtccgcgccctcgtc
gagaccgacgaagagtgcaagacgatcttcgagaccgcccgcggcctcgaaggcctgatc
cgcaacgccggtgtccacgcctgcgcggtcatcatgtcctgcgacccgctgaccgacgcc
atcccgctgtggcagcgtgacgacggttcgatcatcaccggctgggactacccgtcgtgc
gaggccatcggcctgctgaagatggacttcctcggcctgcggaacctcaccgtcatcggt
gacgcgatcgacaacatcaaggccaaccgcgggatcgacatcgacctcgacaccctcggc
gtcgaagacccggagacgtacaaactgctctcccgcggtgacacgctcggcgtgttccag
ctggacggcgggccgatgcgtgacctgctccgccggatgcagccgacggtgttcgacgac
atcgtggcggtgggcgcgctgtaccgccccggcccgatgggcatgaacgcgcacaacgac
tacgccgaccgcaagaacgcgcggcagaaggtcaaaccgatccaccccgagctcgaagag
cccctgaaggagatcctggccgacacctacggcctgatcgtctatcaggagcagatcatg
cacatcggccagaaggtggccggctactccatgggccgcgcggacgtgctccgccgagcc
atgggtaagaagaaggcggaggtcctcgagaaggagttcgtcggcttcgaagagggcatg
aagtcgagcgagctggttcccggcggtttctcctccgaggcgatcaaggcgctctgggac
acgatcctcccgttcgccggctacgcgttcaacaagagccacgcggccgcgtacggcctg
atctcctactggaccgcgtacctcaaggcgaacttcacgccggagtacatggccgcgctg
ctcacctcggtgggtgacaacaaggacaagtccgcggtctacctctcggagtgccgccgc
ctcgggatcaaggtgctcccgccggacgtcaacgagtcggcgctgaggttcgcggccgtc
ggggaggacatccgcttcggcatgggcgccgtccgcaacgtcggcgcgaacgtcgtcgag
tcgatcatcaagacccgcgaggagaaggggaagtactcctccttcaccgatttcctcgac
aagtcggagctggtggcctgcaacaagcgggtcatcgagtcgctgatcaaggcgggcggc
ttcgactcgctcggcaacactcggctttcgatgatccaggtgcacgaggacgcggtcgaa
gccgtggtcccgctcaagcgccaggaggcgatgggccagttcgacctcttcgggttcggc
ggggacgacgacgcggaagccgcggcttcttcttcaccgctcgcgcatctgaagttcggc
gaagaggagtacccgcgcaagcagctcctggcctacgaacgggagatgctcggcctgtac
gtctcggcgcatccgctggacggagccgaacgcatcctgcgcaaacacgcgccgaggccg
atcgccgcgatcctcgccgacccgccgaaggaaggcgagctggtcgtctccgggctgatc
acctcgctggaacgccgggtcaacaagaagggcgagccctgggcgatctgcaccatcgag
gacatggacgcctcgctggaggtcctgtacttccccaagtcctacgcgatgttctccgcc
gacctcatcgaggacaacgcggtcctggtcaagggccgggtgaactggcgcgaggacaag
atgtccatcttcggcggcggtctcgtcccgctcgacctgtccgaggtcggcaacggcgaa
gacgatctgccgctggtcctgctggccgcggcggagaagatcgaccagtcggtggtcagc
gagctgaagcagaccttgttggcgcacaagggtgagaccccggtgcacctcaagctggtc
ggcaagaaccagacggtcttcgcgctctacgactatccggtcaaggtgacgtcgatgctg
atcggtgagctcaagggcatccccgggatcgccgccagcacctga
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