Amycolatopsis sp. EV170708-02-1: MJQ72_31065
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Entry
MJQ72_31065 CDS
T10873
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amye Amycolatopsis sp. EV170708-02-1
Pathway
amye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJQ72_31065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amye03019
]
MJQ72_31065
03009 Ribosome biogenesis [BR:
amye03009
]
MJQ72_31065
Enzymes [BR:
amye01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MJQ72_31065
Messenger RNA biogenesis [BR:
amye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJQ72_31065
Ribosome biogenesis [BR:
amye03009
]
Prokaryotic type
rRNA processing factors
MJQ72_31065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
RD3
Motif
Other DBs
NCBI-ProteinID:
UMP00885
LinkDB
All DBs
Position
complement(6828500..6831589)
Genome browser
AA seq
1029 aa
AA seq
DB search
MSNADTPAVTGGNTATPIAGQLAELPPRIRVHALAKLLGSNSRELMAKLGELGETVRSAQ
SSVTRDVALKLAEALSGGDEPETAEEPVAETPAAPEPEAKPEPEVKAEVKAEPEPAAPQV
EAPSRRVPPALAAPVTPEPPQPTTRPAKAAVHVPVFAAPSPVFLPPEPVAAKPARKPEPA
FAPSEEPASDEDETQTEQAEGQGTDEDGDDANGRRRRRRGRRGRGRGKGGDESSAESENE
DEQPAEAPRGRQQRAKDADTEEAGTESAEEASTESDSDNDGDSDGGSKRRRRRRRRKGGD
DDNAESTSDDPPNTVVHVRQAKAAETERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRR
APILSEAEFLARRESVERTMVVAEKGESTQIGVLEDGVLCEHFVTSSGTGSIVGNVYLGR
VQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDP
VGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRT
ASEGISEEELDRDVRRLKAQWDVIKEKAEAGNGGKKNSAPVMLYEEPDLLVKVVRDLFTE
DFAKLEIQGDKAWDTIYNYVQHVAPDLADRVKRYTGTGSAFADHRIDEQITKALDRKVWL
PSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIV
IDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPC
EHCKGRGVVVSTEPQRTGGGGNGHNHGGGGGGGAKEQGSRRSRGRGKGEDQGQNEPAAAK
AETPPPAQRESVVSAVQAVANATKAAKGEHSPEVTENVEGAALNGHAPQAAEQPAEPAEQ
PAEPVAEATVEQAAEAAAEPVSEPVAEAPATELAGEPVTTPDDEAPAAREEEIAVVAESG
PAPEAPEIPVTPEVVVTEEVSEPAAPAAQEETEPEVDVPAPAVRSTTRRRPRRAASRPAG
PPVKASEKS
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgtcaccggcgggaataccgccacacccatcgcaggt
cagctggccgaactgccgccccggatccgggtgcacgcgttggcgaagctgctcggatcg
aacagccgtgaactgatggccaagctcggtgagctcggcgagaccgtacgcagcgcgcag
tccagcgtcacccgcgacgtggcactcaagctcgccgaagccctctccggcggagacgag
cccgaaaccgccgaggagcccgtcgccgagacccccgcggctcccgaacccgaagccaag
cctgagcccgaggtcaaggcagaggtcaaggcagagccggagcccgccgctccgcaggtg
gaggccccttcgcggcgtgttccgcccgcgctggccgccccggtgaccccggagccgccg
cagccgacgaccaggcccgcgaaggccgccgtgcacgtcccggtgttcgccgcgccttcg
ccggtgttcctgccgccggagccggtcgcggcgaagcccgcccgcaagccggagcccgcc
ttcgccccgtccgaggagcccgcttccgacgaggacgagacgcagacggagcaggccgag
ggccagggcaccgacgaggacggtgacgacgccaacggccgtcgccgccgtcgtcgcgga
cgtcgtggtcgcggccggggcaagggcggcgacgagagctcggccgagtccgagaacgag
gacgagcagcctgccgaagccccgcgaggtcgtcagcagcgcgcgaaggacgccgacacc
gaagaggccggcaccgagagcgccgaagaagcgtccaccgagtccgattcggacaacgac
ggcgattcggacggcggcagcaagcgtcgccgtcgccgccgccgtcgcaagggcggggac
gacgacaacgccgagtccaccagcgacgacccgcccaacacggtcgtccacgtgcgccag
gccaaggccgccgagaccgagcgccccgcgcgcgacgaggtgcgcagcgtgcgcggctcg
acccggctcgaagccaagcgccagcgccgccgggacggccgcgaggccggccgccgtcgt
gcgccgatcctgtccgaggccgagttcctcgcccgccgcgagtcggtcgagcgcaccatg
gtcgtcgccgagaagggcgagtccacgcagatcggcgtgctcgaggacggcgtcctgtgc
gagcacttcgtgacgtcgtcgggcaccggctcgatcgtcggcaacgtgtacctcggccgc
gtgcagaacgtgctgccgtcgatggaggccgccttcatcgacatcggccgcggccgcaac
gccgtgctctacgccggcgaggtcgactgggacgccgccggtctcgagggcaaggcccgc
aagatcgagcaggcgctctccaccggcgattccgtgctggtccaggtcaccaaggacccg
gtcgggcacaagggcgcccggctgaccacgcagatctcactgccgggccgtttcctggtc
tacgtgcccgcgggcggcgccaccgggatctcccggaagctcccggagaacgagcgccgc
cgcctgaaggacatcctcaagcgcatcgtccccgaggacgccggtgtgatcatccgcacc
gcgtccgagggcatcagcgaggaggagctggaccgcgacgtccgccgcctcaaggcgcag
tgggacgtcatcaaggagaaggccgaagccggcaacggcggcaagaagaacagcgccccg
gtcatgctctacgaagagccggacctgctggtcaaggtcgtccgcgacctgttcaccgag
gacttcgccaagctggagatccagggcgacaaggcctgggacaccatctacaactacgtg
cagcacgtggcgccggacctggcggatcgcgtcaagcggtacacgggaaccggttcggcc
ttcgccgatcaccgcatcgatgagcagatcaccaaggcgctggaccgcaaggtctggctg
ccctcgggtgggtacctggtcatcgaccgcaccgaagcgatgacggtcatcgacgtcaac
accggcaagttcaccggatcgggtggcaacctcgaagagacggtgaccaggaacaacctg
gagtcggcggaggagatcgtccgccagctccggctccgggacatcggcggcatcatcgtc
atcgacttcatcgacatggtgctcgagtccaaccgtgagctcgtgctgcgacggctgacc
gaatgcctcggccgcgaccgcacgcgtcaccaggtcgccgaggtcacctcgctcggcctg
gtgcagatgacccgcaagaagatcggcaccgggctgctcgaggcgttctccacgccgtgc
gagcactgcaagggccgcggcgtggtcgtctcgaccgagccgcagcgcaccggtggcggc
ggcaacggccacaaccacggcggtggtggcggtggcggcgccaaggagcagggctcccgc
cggtcccgcggccggggcaagggcgaggaccaggggcagaacgagcccgccgcggccaag
gccgaaacgcctccgcccgcccagcgcgagtcggtggtttcggcggtccaggccgtggcc
aacgccacgaaggcggccaagggcgagcactcgcccgaggtcaccgagaacgtcgagggt
gccgcgctgaacgggcacgccccgcaggcggccgagcagcccgctgagccggccgagcag
cccgcggagcccgttgccgaagcgaccgtcgaacaggcggccgaggcggccgctgagccg
gtctcggagccggtcgccgaggcgcccgcgacggaactcgccggtgaaccggtgacgact
ccggacgacgaggccccggccgcgcgcgaggaagagatcgccgtcgtcgcggaatcgggc
ccggcgcccgaagcgcccgagatcccggtgactcctgaggttgtcgtgacggaagaggtt
tccgagccggcggctcccgcggcccaggaggagaccgagcccgaggtggacgtcccggcc
ccggcagtgcgctccaccacccgccgtcgtccgcgacgggcggcctcacggccggccggt
ccgccggtcaaggcgtcggaaaagagctag
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