Amylibacter sp. IMCC11727: QBD29_00050
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Entry
QBD29_00050 CDS
T08989
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
amyl
Amylibacter sp. IMCC11727
Brite
KEGG Orthology (KO) [BR:
amyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyl03032
]
QBD29_00050 (gyrB)
03400 DNA repair and recombination proteins [BR:
amyl03400
]
QBD29_00050 (gyrB)
Enzymes [BR:
amyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
QBD29_00050 (gyrB)
DNA replication proteins [BR:
amyl03032
]
Prokaryotic type
DNA Topoisomerases
QBD29_00050 (gyrB)
DNA repair and recombination proteins [BR:
amyl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QBD29_00050 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_insert
GyrB_hook
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
WGI21850
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All DBs
Position
7763..10180
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AA seq
805 aa
AA seq
DB search
MSDEQNTPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK
HADFVSVTIHEDESVSVRDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG
LHGVGVSVVNALSDWLELRIWRDGKEHTARFEHGDTARHLEVVGDANGETGTEVRFMAST
ETFSNRDYSFKTLENRLRELAFLNSGVKIILRDERPAEHLETVLQYEGGVKEFVKFLDRS
KEGLLSEPIYVVGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT
INNYAQSSGIVKKEKVSFSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL
MNEKLAEWFEENPVEAKNIVTKIVEAALAREAARKARELTRRKTAFGGTSLPGKLADCQE
RDPSKSEVFLVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSEQITNLIT
ALGTGIGRDEFNIEKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP
PLFKVARGKSEVYLKDQASLEDYLIAQGIEGSSLTLGDTSVIAGQDLARVVEEARNVRFL
LNAFPTHYNRHVLEQAALAGALVPGRVDDNAQGVADAVAERLNKVSLEYERGWTGRITQD
HGLRFARILRGVEESHTIDGKALRSGEARKLGGMTESLQETYSSLATFTRRDNAHPIFGA
TDLLNIVMEEGEKGLSLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVEDLADADDLFTK
LMGDVVEPRREFIQQNALSVENLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgagcaaaatacaccagaagaatacggtgcagattctattaaagttctcaag
ggcttagaagctgttcgtaaacgacctgggatgtatatcggcgacacggatgatgggtct
ggtctgcaccacatggtgtatgaggtcgtggacaacggtattgacgaggcgttggccaaa
catgcggactttgtttctgtcacaatccacgaggacgagagcgtttctgtgcgcgacaac
gggcgtgggattcctgtgggtatccacgaagaagagggcgtgtctgcggcagaggtgatt
atgacccagctgcacgccggcgggaaatttgacagcaactcgtacaaggtatcgggcggt
ttgcacggcgtgggtgtgtcggttgtgaacgcgctgtctgattggttggaattgcgcatc
tggcgtgatggcaaagaacacaccgcgcggtttgagcatggcgacacggcgcggcatttg
gaagttgtgggcgatgccaatggcgagacaggaaccgaagtgcggttcatggcatcgaca
gaaacattttcgaaccgcgattattcgttcaaaacgctggaaaaccgcttgcgcgaattg
gcatttttgaattctggcgtgaaaatcattttgcgcgatgaacgccctgccgagcatctg
gaaacagtgctgcagtatgaaggtggcgtgaaggagtttgtgaagtttctggatcgcagc
aaagagggcctgttgtccgagccgatttatgttgttggcgaaaaagatgacatcggtgtc
gaagtggccatgtggtggaatgacagctaccatgaaaatgtgctgccgttcaccaacaac
atcccacagcgcgatggcggcacgcatatggcgggctttcggggtgcgttgacgcggacc
ataaacaattatgcgcaaagctctggcattgtgaagaaagagaaagtgtcgttcagcggg
gatgacgcgcgcgaaggtctgacctgtgtgttgagcgtgaaagtgcctgatccaaagttc
agctcgcagaccaaagacaagctggtgtcatccgaagtgcgccctgcggtcgaaggtttg
atgaacgaaaaactggcggagtggtttgaggaaaaccccgttgaagcgaaaaacatcgtg
accaaaatcgttgaggccgcgctggcccgcgaggcggcacgtaaggcgcgggaattaacg
cggcgcaagacggcgtttggtggcacatcgttgccaggcaaactggcggattgtcaggaa
cgggatccgtcaaaatctgaagttttcttggtggagggtgattccgctggcggatcagcc
aagcaaggccgaagccgcgaaaatcaggcggtgctgccgttgcgtggtaagatcctgaac
atcgaacgggcgcggtttgacaagatgctgacgtccgaacagatcaccaacctgatcacg
gcgctgggcacagggatcgggcgcgacgagttcaacatcgaaaaactgcgctatcacaag
gtggtcattatgaccgatgccgatgtggatggtgcgcatattcgaacgctgttgttgacg
ttctttttccgccaaatgcccgaactgattgaaggtgggtatttgtacatcgcgcagccg
ccgctgtttaaagtggcccgtggtaaatccgaagtgtacttgaaggatcaggcgtcactg
gaagattatctgattgcgcaagggatcgaaggatcgtcactgacgcttggggatacatcg
gtgattgcagggcaggatttggcacgagttgtggaagaagcccgcaatgtgcggttcctg
ttgaatgcgttcccgacccattacaaccgccatgttttggaacaggccgcgcttgcgggt
gcgttggttccagggcgagtggacgacaacgcgcaaggggttgctgatgcggtggcagag
cgtttgaacaaagtatcgctggaatacgaacggggttggacagggcggattacacaggac
cacggcctgcggtttgcgcgtatcctgcgcggtgttgaagaaagccacacgattgacggg
aaggcgttgcgctctggcgaggctcgcaagctcggggggatgaccgagagtctgcaagag
acatacagttcactggcgacattcacgcggcgtgacaacgcgcatccgatttttggtgcg
accgatctgttgaacattgtgatggaagaaggcgaaaaaggtctgtcattgcaacgctac
aaaggtttgggcgaaatgaacccagatcagttgtgggaaaccacgctcgacccagaagcg
cgcacgttgttgcaggtgaaggtcgaagatttggccgatgcggatgatctgttcaccaaa
ctgatgggcgacgtggtggaaccgcgccgcgagtttatccaacagaatgcgctgagcgtg
gagaatttggatttttaa
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