Amylibacter sp. IMCC11727: QBD29_03135
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Entry
QBD29_03135 CDS
T08989
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amyl
Amylibacter sp. IMCC11727
Pathway
amyl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QBD29_03135 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyl03021
]
QBD29_03135 (rpoB)
03400 DNA repair and recombination proteins [BR:
amyl03400
]
QBD29_03135 (rpoB)
Enzymes [BR:
amyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QBD29_03135 (rpoB)
Transcription machinery [BR:
amyl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QBD29_03135 (rpoB)
DNA repair and recombination proteins [BR:
amyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QBD29_03135 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WGI22426
LinkDB
All DBs
Position
608374..612510
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTHSGFKRIRKYFGKIREVLDMPNLIEVQKSSYDLFLRSGDQAEHTDGEGIQGVFQSV
FPIKDFNETAILEFVKYELERPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTHNGTFVVNGTERVIVSQMHSSPGVFFDHDKGKTHSSGKLLFAS
RIIPYRGSWLDFEFDAKDVVYARIDRRRKLPVTTLLYALGLDQEGICDAYYDTVNYRMIK
KKNGWATKFFPDRIRGTKPAADVIDAKSGEVIAEAGKKVTPRTVKKLKDDGKVTEILVPF
EALAGRFSAKDIINEETGEIWVEAGDELTIEYDKDGEINGGTIPLLVENGVTDIPTLDID
NVNVGPYIRTTMAVDKNAGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDAERYDLSA
VGRVKMNMRLQLDAEDTQRTLRKEDIIAVVKALVDLRDGKGDVDDIDHLGNRRVRSVGEL
MENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN
PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLASFA
RVNKYGFIETPYRRVENGKVTDEVQYMSATEEMRYTVAQANAQLDEDNKFVNDLASSRQA
GEYMLTSPDNIDYIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPY
VGTGIEEVVARDSGAAITARRAGIIDQVDAMRIVVRATADLEPGDPGVDIYRLRKFQRSN
QNTCINQRPLVKVGDTVSKGEVVADGPSTDLGELALGKNILVAFMPWNGYNYEDSILISE
RIVKEDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPA
DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNRHGVE
KDERALQIEREEVERLSRDRDDEMAILDRNIYARLRSLLEGKPAVKGPKGVKAGSTIDAD
LLEALSRGQWWQLALGDDKEAAEVEALNAQYEVQKKALEARFEDKVEKVRRGDDLPPGVM
KMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPVEDMPFLADGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGLGQTISESLRDYRRTGDMTPVKDAMKVAYGEDLYNEVVADMNDE
QFLEAAGNVTGGVPIATPVFDGAKEADVNDALTRAGFETSGQSIVFDGRTGEQFARPVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYEAIVKGEDNFEAGVPESFNVLVKEIRSLGLNVELLDAETE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacccattccggcttcaaacgcatccgtaagtatttcggcaaaatccgtgaa
gtattggatatgccaaacctgatcgaagtacagaaaagctcttacgatcttttcctgcgg
tccggtgatcaagcagaacacacagacggtgaaggcatccaaggtgttttccaatcggtg
ttcccgatcaaagatttcaatgaaactgccattctggagttcgtaaaatacgagctggaa
cgtccgaagtacgacgttgaagagtgtcaacagcgtgacatgacgtacagtgcgccgctg
aaggtgacattgcgtttgatcgtgtttgatgtggatgaagatacaggcgcgaagtctgtt
aaagacatcaaagaacaagacgtgttcatgggcgatatgcctttgatgacgcacaacggt
acattcgttgtgaacggcaccgagcgtgtgatcgtttcccagatgcacagctcccctggt
gtgttctttgaccacgacaaaggcaaaacccattcgtctggtaagttgttgttcgcatcc
cgcatcatcccataccgtgggtcatggttggatttcgaatttgacgccaaagatgtggtt
tacgcgcggatcgaccgtcgtcgtaaattgccagtgacaacgttgttgtatgcccttggt
ctggaccaagaaggcatttgtgacgcgtattacgacaccgtgaactaccgtatgatcaag
aagaagaacggttgggcgaccaaattcttcccagatcgtattcgtggcacgaaacctgct
gctgatgtgattgacgccaaatctggtgaagtgatcgcagaagcgggcaaaaaggttacg
ccacgcacagtgaaaaagctgaaggatgatggcaaagtcaccgagattttggttccattc
gaagcgcttgcaggtcgtttttctgcgaaagacatcatcaacgaagaaacaggcgagatc
tgggtcgaagcgggtgatgagctgacgatcgaatacgacaaagacggcgaaatcaacggc
ggtacaattccgttgttggtggaaaatggtgtcactgacatcccaacgctcgacatcgac
aacgtaaatgttggcccttacatccgtacaacgatggcagtggacaaaaacgcgggtcgt
gacacagcgttgatggatatctaccgtgtgatgcgcccaggcgagccacccaccgttgaa
gccgcatctgcgttgtttgatacactgttctttgatgcagagcgttatgatctgtccgcg
gttggccgtgtgaaaatgaacatgcgtttgcagttggatgccgaagacacgcagcgcaca
ttgcgcaaagaagacatcattgctgttgtaaaagcattggttgatctgcgtgacggcaaa
ggcgacgtggacgatattgaccaccttgggaaccgccgtgtgcgctccgttggtgagttg
atggaaaaccagtaccgtgttggcttgctgcgcatggaacgtgcgatcaaagagcggatg
tcatccgttgaaatcgacacgatcatgccgcaagacctgatcaacgcgaaaccagctgcg
gctgcggtgcgtgagttctttggctcatcccagttgtcccagtttatggaccaaaccaac
ccattgtccgaagtcacgcacaagcgccgcttgtccgcgcttgggcctgggggtttgacc
cgtgagcgtgctggctttgaggtgcgcgacgtgcatccaacgcactatggtcggatgtgt
ccgattgaaacaccggaagggccaaacattggtctgatcaactcgctcgcgtcttttgcg
cgtgtgaacaaatacggtttcatcgaaacaccataccgccgcgttgaaaacggcaaggtt
acagacgaagtgcaatacatgtctgcgaccgaagaaatgcgttacactgtagcgcaggcc
aacgcgcaattggatgaagacaacaaattcgtaaacgatctggcgtcttcgcgtcaggcg
ggcgaatatatgctgacttcgccagacaacatcgattacatcgacgtttccccaaaacag
ctggtgtctgttgcggcgtctttgatcccattccttgaaaacgatgacgccaaccgcgca
ttgatggggtcaaacatgcaacgtcaggctgttccattgttgcgggcagaagccccatac
gttggtacagggatcgaagaagttgtggcacgggattccggtgctgcgatcactgcgcgc
cgcgcaggtatcatcgaccaagttgacgcgatgcgtattgttgtgcgtgcgacagctgat
ctggaacctggtgatccaggtgtagacatctatcgcctgcgtaaattccaacgctctaac
cagaacacatgtatcaaccagcgcccattggtgaaggttggtgacaccgtgtccaaaggc
gaagttgttgccgatggcccgtctaccgatttgggtgaattggcgcttggtaagaacatc
ctcgtcgcgtttatgccttggaatggctacaactatgaggactccatcctgatttccgaa
cggatcgtgaaagaagacgtgttcacatctgtccacatcgaagaattcgaagtggcggcc
cgtgatacgaaactgggtccagaggaaatcacacgcgacattccaaacgttggtgaagaa
gcgctgcgcaaccttgatgaggctggtatcgtttacatcggtgcggaagttggccctgcg
gatatccttgttggtaaaatcacgccaaaaggcgaaagcccgatgacgccagaagaaaag
ctgctgcgcgccatctttggtgagaaagcatctgatgtgcgtgacacgtccttgcgtttg
ccaccaggggattacgggactgttgttgaagttcgcgtgttcaaccgccacggcgttgaa
aaagacgaacgtgcgctgcaaatcgaacgcgaagaagtcgagcgtttgagccgtgaccgt
gacgatgagatggcgatccttgatcggaacatctatgcgcgtctgcggtccttgctggaa
ggcaagccagcggtcaaaggtccaaaaggcgttaaagctggttcgaccattgatgctgat
ctgctggaagcattgtcccgtggacagtggtggcaattggcactgggcgatgacaaggaa
gcggcagaagtcgaagccttgaacgcacagtacgaagtgcagaaaaaggcgctggaagcc
cgctttgaggacaaggtagagaaggttcgccgcggcgacgatctgcccccaggtgtgatg
aagatggttaaagtgttcatcgcggtgaagcgtaagctgcaaccaggtgacaaaatggcc
ggtcgtcacggcaacaaaggtgttatttcccgcgttgttcctgtggaagacatgccgttc
ttggccgatggtacgcccgttgatttctgtctgaacccgcttggtgttccgtcacggatg
aacgttggtcagattttggaaacacacatgggttgggccgcgcgcggcttgggccagacc
atttccgaaagtctgcgtgattatcgtcgtacaggggatatgacccctgtgaaggatgcc
atgaaagtggcttacggcgaagatctgtacaacgaagttgtggcagacatgaacgacgaa
cagttccttgaagctgctggcaacgtcacggggggtgttccaatcgcgacgcctgttttt
gacggtgcgaaagaagcagatgtgaacgacgcgttgacacgcgctgggttcgaaacctct
ggtcagtccatcgtgtttgacggccgcacaggcgagcagttcgcacgccctgttacggtt
ggtgtcaaatacctgctgaaactgcatcaccttgtggatgacaaaatccacgcgcgttcc
actggtccatactccttggtcacacagcaaccgctgggtggtaaggcacagttcggtggt
cagcgttttggtgagatggaagtttgggcattggaagcctacggcgccgcttacaccttg
caggaaatgctgacggtgaaatcggatgacgttgcaggccgcaccaaggtctatgaagcc
atcgtgaaaggcgaggacaacttcgaagctggtgttccagaatcgttcaacgttcttgtg
aaagaaatccgctcgctcggcctgaatgtcgagctgctggacgcggaaacagagtaa
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