Amylibacter sp. IMCC11727: QBD29_05840
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Entry
QBD29_05840 CDS
T08989
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amyl
Amylibacter sp. IMCC11727
Brite
KEGG Orthology (KO) [BR:
amyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyl03019
]
QBD29_05840 (hrpB)
Enzymes [BR:
amyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QBD29_05840 (hrpB)
Messenger RNA biogenesis [BR:
amyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QBD29_05840 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
CON_HrpB
AAA_19
HA2_N
AAA_30
Flavi_DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WGI22939
LinkDB
All DBs
Position
complement(1130879..1133341)
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AA seq
820 aa
AA seq
DB search
MSGLPIEAALPALADALRTAKMAVLQAPPGAGKTTRVPLFLIEETLIDGKILMLEPRRLA
ARAAAERMAETLGETAGQTVGYRMRGDSKSSPETRIEVITEGILTRMIQSDPELTGIGCI
IFDEFHERSLQSDTGLAFTLEVREALRPDLHLIVMSATLDAAPVAKLIGDAPMVTSEGRS
FPVESRHLPKPWAKPNTHGPRFENAMADLIAQAAKETTGGILAFLPGEGEIRRTEAVLQN
ALPADCILRPLYGGLPFAEQRRAVLPEKQGRKVVLATSIAETSLTIQDVRVVVDGGRARR
ARFDAGSGMSRLITDRVTKAEATQRMGRAGRVAQGICYKLWTKGEEGGLAPFPLPEILSA
DIASLILELAAWGTSDPQTLPFLDHPRDADVAQAQALLRSLGALDADNRITPHGTALARH
PLHPRLAHMLEHGGPDAPLLAALIESRDPLPRTAPSDLSLRLEALKDPHAFANTRPFKTN
AGTIKSIKHEAKRLKHTPSSLSLAETLALAYPDRIGLRRKGDAPRFVLSGGKGAVFRDDD
PTGANRLIIATNLDGDAREAKVRAALPITQAELANVYGDQFEDVNICEWSKRDRRVLTRK
RTQFGQLVLDDQNWKDCPPDASNAAMCDGIRDLGLQCLPWSDAATLFRARVEWLRAQDHA
LPDFSDTALLETLTDWLEPHLTGIRAPDGLKKLDLLTILRNILSWEAQQTLDQLAPASIT
APTGTKLPIDYGAAQPKIAVRLQELFGMTTHPTAGPKRLPLLIELLSPARRPVQTTADLP
NFWSTSYADVRKDMRGRYPRHPWPEDPTQAEPTRRVKPRN
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcctcccaattgaggctgccttgccagcattggcggatgccctgcgcacagcc
aaaatggccgtactacaagcgcctccgggcgcaggtaaaaccacccgcgtgccgctgttc
ctgatcgaagagacccttatcgacggtaaaattctgatgctggaacctcgccgccttgca
gcacgcgctgcggcggaacgcatggcggaaacattgggtgaaacagcaggtcaaaccgtg
ggttatcggatgcgcggggacagcaaatcatcgcccgaaactcgaatcgaggtgattacc
gaaggtattctgacccgtatgattcaatccgatcctgaacttacggggattggttgcatc
atctttgatgaatttcacgaacgcagcctgcaatcagacacaggtttggcctttacacta
gaagtccgcgaggcattgcgccccgaccttcatctgattgttatgtccgccacgctcgac
gctgcgcctgtcgcaaaactcatcggcgatgcgcccatggtcacatcagaagggcgctct
tttcccgtggagtcgcgccacctgccaaaaccttgggcgaaacccaacacacatggaccg
cggtttgaaaacgcgatggccgacctgatcgcccaagctgcaaaggaaaccacaggcggc
attctcgcctttttgccaggtgaaggggaaatccgccgcactgaagcagtgttgcaaaac
gccctgcccgccgattgcattcttcgccctctttacggtggtttgccgtttgctgaacaa
cgccgcgcggtgttgcctgaaaaacagggccgcaaagttgtgctggccacctccatcgcg
gaaacgtccctgacgatccaagacgtacgcgttgtggtggatgggggccgcgcacggcgc
gcgcgatttgatgcaggctcaggcatgtcgcgcctgatcacggaccgcgtcaccaaggcc
gaagccacacagcgtatgggccgcgcaggtcgtgtggcacagggcatttgctacaagctt
tggaccaaaggcgaagaaggcggcttggcccccttccctttgcccgaaattctgtctgcg
gatatcgccagtctgatccttgaactggccgcatggggcacatcggacccacagactctg
ccgtttctcgatcacccgcgtgacgcagacgtggcgcaggcccaagcgttgctgcggtcc
cttggtgcgctggatgctgacaatcgcattactccgcatggaaccgcactggcgcgtcac
ccgttgcatccgcggcttgcccatatgttagaacacggcgggccggatgcaccgctgctg
gcagcgttaatcgagtctcgcgatcctctgccgcgcaccgcgccaagcgatcttagctta
cgactggaagcgctcaaagacccgcacgcctttgcaaatacacggccgttcaaaaccaac
gcgggcacaatcaaatcaatcaaacacgaagccaaacgcctgaaacacacaccgtccagc
ctctcgctcgctgaaacccttgcgcttgcctatcctgaccgtatcgggctgcggcgcaaa
ggggatgcgcctcgatttgtattgtctggtggcaaaggtgcggtttttcgagacgacgat
cccacgggggcaaaccgcctaatcattgccacgaatcttgatggggacgcgcgcgaagca
aaggttcgcgccgctttgccaatcacgcaggccgaactcgccaatgtatacggcgatcaa
ttcgaagacgtgaatatctgtgaatggtccaaaagggaccgccgcgtgctgacgcgcaaa
cgcacacagtttgggcagttggtgctggatgatcaaaactggaaagactgtccccccgac
gcgtcaaacgccgccatgtgcgacggcatccgtgacttggggttgcaatgtcttccttgg
tccgatgccgcaactttgtttcgcgctcgcgttgaatggctgcgcgcgcaagaccacgct
ttgccagatttttccgatacggcgcttcttgaaacactgaccgattggctcgagccgcat
ttgacaggaattcgtgcccctgacggcctgaaaaagctcgacctgctgaccatcctgcgc
aacatcttgtcttgggaggcacaacaaaccctcgaccaactggcccctgcaagcatcaca
gccccgacaggaacaaaactgccgattgattatggcgcggcccaacctaaaattgcagtg
cggttgcaagaactctttggcatgaccactcatcccacagctgggcctaaacgcttgccg
ttgttgattgaacttttgtctcctgcgcgccgtcccgtgcaaaccaccgctgatttaccg
aatttctggtcaaccagttatgcagacgtgcgcaaagacatgcgcgggcgctatccccgc
cacccgtggcccgaagacccgacacaggcggaacccacgcggcgggttaagccacgcaat
taa
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