Amylibacter sp. IMCC11727: QBD29_11440
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Entry
QBD29_11440 CDS
T08989
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amyl
Amylibacter sp. IMCC11727
Brite
KEGG Orthology (KO) [BR:
amyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyl03016
]
QBD29_11440 (rnd)
Enzymes [BR:
amyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
QBD29_11440 (rnd)
Transfer RNA biogenesis [BR:
amyl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QBD29_11440 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WGI20725
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All DBs
Position
complement(2273484..2274641)
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AA seq
385 aa
AA seq
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MRTITTTEQLAEFCAKCATFDYVTIDTEFLRERTYYSKLCLIQMAHPGEGNDGAVLVDVL
EEGLSLDPLYALFQDESVTKVFHAARQDLEIFFVDRQIFPKPFFDTQVAAMVCGFGEQVG
YETLVRKIAKAQLDKSSRFTDWSQRPLSDKQKHYALGDVTHLRDIYEFLAKRLEKTKRTS
WVEEEVEILTSPETYNTDPNDAWKRVKTRSSSRRFLATVQELAKFRETYAQDRNIPRNRV
YKDDALMEVAATRPKAIGDLSKSRLLLREARKGQIAEGIIAAVKAANAIKDEDLPAVAKV
KQRPQGSEGLADLLRVLLKAKAEEAGVAQKLIANASDLDDIAAQVGGDHVFRGWRSEVFG
NDARDLCDGKIALSASGSSVKIVKV
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgagaacaataacaacgaccgagcagttggcagaattttgcgccaaatgcgcaactttc
gattacgtcacaatcgatactgaatttctgcgcgagcggacctattattccaagctttgc
ctgatccaaatggcacatccaggcgaagggaatgatggcgctgtattggtcgatgttctg
gaagaggggctgagcctcgatccgttatacgcgttgtttcaagatgaatcggtgaccaaa
gtgttccatgccgcgcggcaggatttggaaatcttctttgtggatcgccaaatcttccca
aaaccgtttttcgacactcaggttgcggcaatggtctgcggctttggggagcaggtcggc
tatgaaacgctggtgcgcaagattgctaaggcgcaacttgataaatcgtcccgtttcaca
gattggtcgcagcggcctttgtcagacaaacagaaacattacgcgctgggcgatgtgacc
catctgcgcgatatttatgaatttttggccaaacggttggaaaagacaaaacgcacgtca
tgggtcgaagaagaggtggaaatcctcaccagcccagaaacctataacacggatccgaat
gacgcgtggaaacgggtgaaaacccgcagcagttcccgccgttttttggcaacggtgcaa
gaattggcaaagtttcgggaaacctatgcgcaggaccgaaatattccgcgcaaccgcgtc
tacaaagacgatgctctgatggaagtggcggcaacgcgccccaaagcaattggtgatctg
agcaaatcgcgcctgttgctgcgtgaagcgcgcaaggggcagatcgccgaaggcattatc
gcagccgtcaaagcggcgaatgcgatcaaagacgaagacctgcctgccgtggccaaggtg
aaacagcgtccgcaaggcagcgaaggtttggccgatctgttgcgcgtattgctcaaagcc
aaagcagaagaagcaggggtggcccaaaagctgattgcgaatgcctctgatctggacgac
attgcggcacaggtgggcggagatcacgtgtttcgcggttggcgcagtgaagtttttggc
aatgatgccagagacttatgcgatggtaaaatcgcgctttcagccagtggaagcagtgtg
aaaatcgttaaggtctaa
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