Aeromonas mytilicola subsp. aquatica: ACFWHB_18205
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Entry
ACFWHB_18205 CDS
T11432
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amyq Aeromonas mytilicola subsp. aquatica
Pathway
amyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFWHB_18205 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyq03019
]
ACFWHB_18205 (rnr)
03016 Transfer RNA biogenesis [BR:
amyq03016
]
ACFWHB_18205 (rnr)
Enzymes [BR:
amyq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACFWHB_18205 (rnr)
Messenger RNA biogenesis [BR:
amyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACFWHB_18205 (rnr)
Transfer RNA biogenesis [BR:
amyq03016
]
Prokaryotic type
tRNA degradation factors
ACFWHB_18205 (rnr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XJS60568
LinkDB
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Position
complement(3986308..3988674)
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AA seq
788 aa
AA seq
DB search
MSQKDPFLQREAEKYDNPIASREMLLELIRGHEKPMSREELAKVLKLTDEEPLEALRRRL
RAMERDGQLVFTRNQCYALPDRLNLVKGYVLGHKDGFGFLRPEGGGSDLFLNNREMQRLM
HGDYVLVQPTEIDRKGRQEARLVRLLKAREADIVGRYFVENGVGFVVPDDSRIGQDIIIP
EGENKGARQSQVVVVRITQRATSRINAVGTVLDVLGENMAPGMEIEIALRTHGIPHTWPE
EVTKEVAGLGEQVPSTAKEGRIDLRALPLVTIDGEDARDFDDAVFCEAKRGGGWRLWVAI
ADVSAYVKPGTALDAEAYQRGNSVYFPEFVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAAGRMSGYKFYEAVMNSHARMTYSKVAGILDGEPKLRQQYEPLVGHIEELNNLYKALKH
ARHQRGAVEFESEETRFIFNAQRKIDQIVPLVRNDAHKIIEECMIQANVAAARYIEKNEA
SALFRVHDRPGEERLTGFRDFLAELGLELKGGLEPEPKDFAELAAKFEGRPDAELLSTML
LRSMRQAVYQADNIGHFGLALKSYAHFTSPIRRYPDLILHRAIKYQTAKEQQGNLRHKWT
PSGGYHYQLEEVDPMGEHCSMTERRADDATRDVADWLKCEYMLDHVGDDFDGVIASVTGF
GFFVRLADIHIDGLVHVSTLTNDYYQFDPLHMQLIGENFRRRYRLGDKVRVKVMGVNLDD
RKIDFVMVEAPLTGKDGKEVVRKPAKGGQRHDKRKESKDSGKSDKGGRAKPSNRRPSKKA
RDKTKSTK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaaagatcctttcctccaacgcgaggccgaaaaatacgataaccccatcgcc
agccgcgagatgctgctggagcttatccgtggtcatgagaaacccatgtcccgggaggag
ttggccaaggtcctcaagctgaccgacgaagagccgttggaagccttgcgccgtcgtctg
cgcgccatggagcgcgatgggcaactggtattcactcgcaaccaatgttacgccctgccg
gatcgtctgaatctggtgaaaggctatgtgctcggccacaaagatggattcggttttctg
cgccccgagggtggcggatcggatcttttcctgaacaaccgcgagatgcagcggctgatg
cacggcgactacgtgctggtgcagccgaccgagatcgaccgcaagggtcgtcaggaagcg
cgtctggtgcgcctgctcaaggcccgcgaggctgacatcgtcggccgctacttcgtcgag
aacggggttggcttcgtggtgccggatgacagccgcatcggccaggacatcatcatcccg
gaaggggagaacaagggtgcccgccagagccaggtggtggtcgtacgcatcacccagcgc
gccacctcccgcatcaacgcggtcggtacagtgctggacgtgctgggcgagaacatggcc
cctggcatggagatcgagatcgccctgcgcacccacggcatcccgcacacctggccggaa
gaggtgaccaaggaggttgccggtctgggcgagcaggtgccttcgacggccaaagagggt
cgcatcgatctgcgtgccctgccgctggtcaccatagacggggaagatgcccgcgacttc
gatgacgccgtcttctgtgaagccaagcgcggcggcggctggcgcctgtgggttgccatc
gcggacgtctccgcctatgtgaagcccggtacggcgctggatgccgaagcctatcagcgc
ggcaactccgtctacttccccgagttcgtggtgcccatgctgccggaggtgctctccaac
ggcctctgctccctgaacccgcaggttgaccgcctctgcatggtgtgcgagatgaccatc
tccgccgccggccgcatgtccggttacaagttctacgaagccgtgatgaactcccacgcc
cgcatgacctacagcaaggtggcggggatcctggatggcgagcccaagctgcgtcagcag
tacgagccgctggtgggtcacatcgaggagctgaacaacctctacaaggcgctcaagcac
gcccgtcaccagcgtggcgccgtggagttcgagagcgaagagacccgcttcatcttcaac
gcccagcgcaagatcgatcagatagtgccgctggtgcgcaacgacgcccacaagatcatc
gaagagtgcatgatccaggcgaacgtggccgcggcccgttacatcgagaagaacgaagcc
tctgccctgttccgggtgcacgaccgcccgggcgaagagcgtctgaccggtttccgtgac
ttcctggccgaactgggtctggagctcaagggtggcctcgagccagagccgaaagacttt
gccgagctggctgccaagtttgagggacgcccggatgccgagctgctctccaccatgttg
ctgcgctccatgcgccaggcggtctatcaggccgacaacataggtcacttcggtctggcc
ctgaagtcctatgcgcacttcacctcgccgatccgtcgttaccccgacctcattctgcac
cgcgccatcaagtaccagacggccaaggaacagcagggcaacctgcgccacaagtggacg
ccgagcggtggttaccactaccagctggaagaagtggatcccatgggcgagcactgctcc
atgaccgagcgccgtgccgacgatgcgacccgcgacgtggcagactggctcaagtgcgag
tacatgctggatcacgtgggtgacgacttcgacggcgtcatcgccagcgtcaccggcttt
ggcttcttcgtgcgcctggcggatatccacatcgacggtctggtgcacgtcagcaccctc
accaacgactactaccagtttgatcccctgcacatgcagctgatcggcgagaacttccgc
cgtcgctaccgtctgggtgacaaggtgcgcgtcaaggtgatgggcgtgaacctggacgat
cgcaagatcgacttcgtgatggtggaagcgccgctgaccggcaaggatggcaaagaggtg
gtgcgcaagcccgccaagggtggccagcgtcacgataaacgcaaagagagcaaggatagc
ggcaaatccgacaagggtggccgtgccaagcccagcaacagacgaccgagcaagaaggct
cgggacaagaccaagagcactaaatga
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