Aeromonas mytilicola subsp. aquatica: ACFWHB_19680
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Entry
ACFWHB_19680 CDS
T11432
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
amyq Aeromonas mytilicola subsp. aquatica
Pathway
amyq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACFWHB_19680 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyq03400
]
ACFWHB_19680 (recD)
Enzymes [BR:
amyq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACFWHB_19680 (recD)
DNA repair and recombination proteins [BR:
amyq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACFWHB_19680 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
NAT10_TcmA_helicase
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
AAA_22
AAA_16
nSTAND3
CbiA
AAA_28
SLFN-g3_helicase
NTPase_1
TraI_hel_assoc_N
SRP54
UvrD_C
T2SSE
RuvB_N
MobB
Motif
Other DBs
NCBI-ProteinID:
XJS60835
LinkDB
All DBs
Position
complement(4288112..4290151)
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AA seq
679 aa
AA seq
DB search
MKSDGMIERLKALALAGRIRQLDLQFAKLVADLGGSPELVLGAALACFELGRGHVCLPLD
MLAAGSLRPFGLVPDQSRDLLGDLADPASWPALFAASPLVGTEQHEGEVPRWPLRLWHGR
LYLTRYHDFELGVARHLRALSERAEWPEIAPALSRLFARDHGLVFGALLKARLAPDFSAR
HFIEKYLDLVFPNEVDWPAIEALLGSAQAASDLSKLDALVPEALCCNGQKLAAATAAARP
FAVISGGPGTGKTTTVAKLLAILVETGLQTGKAPAIRLVAPTGKAAARLTESIGSALQAL
DLPPEWAQAIPTEAGTLHRLLGVIPGRSQFRHHAGNPLHLDLLVVDEASMVDLPMMARLL
DALPSHARLILLGDKDQLASVEAGAVLGDICSFIEQGISPAQADWLSRQTGYRLQGSPAG
APVRDSLCLLSKSWRFDQHSGIGQLARACNAGDAAAVESVWSAGFKDISLHPWAGEAYEA
LIAQGVAGYGSYLKAARAGEEASAVFKAFNGFQILCALRDGPFGVLGLNERLELALSRAG
LIQRDGDWYAGRPVMVVRNDHGIGLYNGDMGLCLPDETGRLKVWFEQPDGSLRALLPSRL
PPHETVYAMTIHKSQGSEFAHTVLVLPDSPSPLLTRELVYTGITRAKARLDLYGDRALLA
QAVRKKTERYSGLAERLGE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcgacggtatgatcgaacggctgaaagccctggcgctggcggggcgtatccgc
cagctggatctgcaatttgccaaactggtggccgatctgggcggcagccccgagctggtg
ctgggggccgcgctcgcctgcttcgagctggggcgcggccatgtttgcctgccgcttgac
atgctcgctgccggctccctgcgccccttcgggctggttccggatcagagccgggatctg
ctgggggatctggcggatcctgccagttggcccgccctctttgcggcaagtccgctggtt
ggtacggaacagcatgagggggaggtcccccgctggccgctgcggctctggcacgggcgg
ctctacctcacccgctaccacgattttgagctgggggtagcccgtcatctgcgcgcgtta
agtgaacgtgccgaatggcccgagatagccccggccctgtcgcgcctctttgcccgcgac
catgggttggtgttcggggcgctgctcaaagcccgcctcgcccccgacttctcggcccgc
cactttatcgagaagtatctggatctggtgttcccgaacgaggtggattggcccgccata
gaggcgctgctggggagcgcccaggcggcgagcgacttgagcaagctggatgcgctggtg
cccgaggcgctctgctgcaacggccagaagctggcggcggccaccgcggcggcgcgcccc
ttcgcggtgatctccggcggccccggcaccggcaagaccaccactgtggccaagctcctg
gccattctggtggagacaggcctgcaaacaggcaaggccccggcgatccggctggtggcc
cccaccggcaaggcggcggcgcgcctgaccgagagcataggctctgccctgcaggcgctg
gacttgccccccgagtgggcccaggccatccctacagaggcgggcaccttacaccggctg
ctcggggtgatcccggggcgcagccagttccgccaccacgcgggcaacccgctgcacctc
gacttgctggtggtggatgaggcctccatggtcgacctgcccatgatggcacgcctgctc
gatgcgctgccgagccacgcccgcctcatcctgctcggcgacaaggatcagctcgcctcg
gtggaggcgggggccgtgctcggggatatctgcagctttatcgaacagggcatcagcccc
gctcaggcggattggctctcccgccagaccggctaccgcctgcagggttcgcctgccggt
gcacctgtgcgcgacagcctctgcttgctttccaagagctggcgcttcgatcagcactcc
ggcataggccagctggcgcgggcctgcaacgcgggcgatgccgccgcggtggaatcggtc
tggagtgcgggattcaaggacatcagcctgcacccctgggcgggagaggcctacgaggcc
ctgattgcccaaggggtggccggttacggcagctatctgaaggcggcccgcgccggagaa
gaggcgtctgccgtgttcaaggcgttcaacggcttccagatcctctgcgccctgcgggac
ggacccttcggggtgctggggctcaacgagcggctcgaactggccctgtctcgggccggg
ctgatccagcgcgacggcgactggtatgcgggccgccccgtgatggtggtgcgcaacgac
cacgggatcggcctctacaacggtgacatggggctctgcctgcccgatgaaaccggccgc
ctcaaggtgtggttcgagcagccggacggcagcctgcgcgcgctcttgccaagccgattg
cccccccacgagactgtctacgccatgacaatccacaaatcccagggctcggagtttgcc
catacggtgctggtgctgccggacagccccagccccctgctgacccgcgagctggtctat
accggcatcacccgcgccaaggcccgcctcgatctctacggcgatcgcgcgctattggca
caggccgtgcggaaaaagaccgagcgctattccggattggcggagaggttgggggagtga
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