KEGG   Aeromonas mytilicola subsp. aquatica: ACFWHB_21115
Entry
ACFWHB_21115      CDS       T11432                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
amyq  Aeromonas mytilicola subsp. aquatica
Pathway
amyq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amyq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACFWHB_21115 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amyq03021]
    ACFWHB_21115 (rho)
   03019 Messenger RNA biogenesis [BR:amyq03019]
    ACFWHB_21115 (rho)
Transcription machinery [BR:amyq03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACFWHB_21115 (rho)
Messenger RNA biogenesis [BR:amyq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACFWHB_21115 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB S1CSD-TOTE-2 AAA_22 AAA_25 AAA Mor FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: XJS61098
LinkDB
Position
complement(4599959..4601224)
AA seq 421 aa
MNLTELKNTPVSELVQLGESMGLENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNEVN
YDRPENVRNKILFENLTPLHANERLRMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVYPAIDI
TRSGTRKEELLTAPDELQKMWILRKIIHPMGEIDSIEFLIDKLAATKTNDEFFDSMKRQQ
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactaaagaacactcctgtgtctgagctggtacagcttggcgaatcc
atggggttggaaaatctggctcgggcgcacaagaaagacatcatcttcgcgatcctcaag
gcgcacgccaagggtggcgaggatatctttggcgacggtgtgctggaaatcctgaccgac
ggctttggcttcctgcgcagcgcagacggctcctatctggccggcccggacgatatctac
gtctccccgagccagatccgccgtttcaacctgcgaaccggcgataccgtttccggcaag
atccggccaccgaaagagggcgaacgttatttcgcgctgctcaaggtcaacgaggtcaac
tacgaccgcccggaaaacgtccgcaacaagatcctgttcgagaacctgactccgctgcac
gccaacgagcgtctgcgcatggagcgtggcaacggctcgaccgaagacatcacagcccgc
gtgctggacctggctgcccccataggtaaaggccagcgtggcctgatcgtggcgccgccc
aaggccggtaagacaatgctgctgcagaacatcgcccagagcatcgcctacaaccatccg
gactgtgaactgatcgtgctgctcatcgacgagcgtcccgaagaagtgaccgagatgcag
cgcatggtgaagggtgaagtgatcgcctctaccttcgacgaacctgcttcgcgccacgtt
caggttgccgacatggtgatcgagaaggccaagcgtctggtcgagcacaagaaggatgtg
gtcatcctgctggactccattacccgtctggcgcgtgcctacaacaccgtcatcccctca
tccggcaaggtactgaccggtggtgtggacgccaacgccctgcacaggcccaagcgcttc
ttcggtgctgcccgcaacgttgaggaaggcggcagcctgaccatcatcgccaccgcgctg
gtcgacaccggctccaagatggatgaagtcatctacgaagagttcaagggtaccggcaac
atggaactgcacctctcgcgcaagattgccgagaagcgtgtctacccggccatcgacatc
acccgctccggcacccgcaaggaagagctgctgactgcgccggacgagctgcagaagatg
tggatactgcgcaagatcattcaccccatgggcgagatcgacagcatcgagttcctcatc
gacaagctggcagccaccaagaccaatgacgagttcttcgactccatgaagcgtcagcag
aaataa

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