Amycolatopsis sp. TNS106: CVV72_16365
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Entry
CVV72_16365 CDS
T10876
Name
(GenBank) RNA polymerase subunit sigma
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
amys Amycolatopsis sp. TNS106
Brite
KEGG Orthology (KO) [BR:
amys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amys03021
]
CVV72_16365
Transcription machinery [BR:
amys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CVV72_16365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
Motif
Other DBs
NCBI-ProteinID:
QXV58397
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Position
3698928..3699959
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AA seq
343 aa
AA seq
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MSVQTLEREARGIRERRIPAQSTQEPVSTGALTDADLDAQSPAADLVRVYLNGIGKTALL
SAADEVELAKRIEAGVFAQHMLDTAEGLTPKRRSEMSALVRDGHVAKNHLLEANLRLVVS
LAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRT
IRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPAHKISDLLDHSRDPVSLDM
PVGTEEDAPLGDFIEDSEATDAESAVISGLLQDDLRRVLATLDDRESQVIRLRYGLDDGQ
PRTLDQIGKHFGLSRERVRQIEREVMSKLRQGERADRLRAYAS
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtccagactctcgaacgcgaagcgcgcgggattcgcgagcgccgtatcccggcg
caatccacccaggagccggtgagcacgggggcgctcaccgacgccgacctcgacgcccag
agcccggccgcggacctcgttcgcgtgtacctcaacggaatcggcaagacggcgctgctg
tccgccgccgacgaggtcgagctggccaagcgcatcgaagcgggcgtgttcgcccagcac
atgctcgacacggccgagggcctcacgccgaagcggcgttcggagatgtccgccctcgtg
cgtgacggccacgtcgcgaagaaccacctgctggaggccaacctccgcctcgtggtctcg
ctcgcgaagcgctacaccggccgggggatgccgctgctcgacctgatccaggaggggaac
ctgggtctcatccgcgcggtggagaagttcgactactccaaggggttcaagttctcgacc
tacgccacctggtggatccgccaggccatcaccagagggatggccgaccagggacgcacc
atccggctgccggtccacctggtggaacaggtgaacaagctggcgcgtatcaagcgcgac
ctgcaccagcagctcggccgggacgccacccacgaggagctggccgccgaatcgggcatt
ccggcgcacaagatctccgacctgctcgaccactcgcgtgacccggtgagcctcgacatg
ccggtcggcaccgaggaggacgccccgctcggtgacttcatcgaggactccgaggcgacc
gacgccgagagcgccgtgatctccggcctgctccaggacgacctgcgccgcgtgctcgcg
acgctggacgaccgcgagtcccaggtgatccgcctgcgttacggcctcgacgacggccag
ccgcgcacgctcgaccagatcggcaagcacttcgggctttcccgtgagcgcgttcggcag
atcgagcgagaggtcatgtcgaagctgcgtcagggtgagcgagcggaccgcctgcgcgcc
tacgcttcgtaa
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