Amycolatopsis sp. TNS106: CVV72_25390
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Entry
CVV72_25390 CDS
T10876
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
amys Amycolatopsis sp. TNS106
Pathway
amys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVV72_25390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amys03021
]
CVV72_25390
03400 DNA repair and recombination proteins [BR:
amys03400
]
CVV72_25390
Enzymes [BR:
amys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVV72_25390
Transcription machinery [BR:
amys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVV72_25390
DNA repair and recombination proteins [BR:
amys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVV72_25390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QXV60009
LinkDB
All DBs
Position
complement(5658832..5659905)
Genome browser
AA seq
357 aa
AA seq
DB search
MLISQRPALGEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN
PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLILDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE
ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK
LVGLGLALKDSPPGFDPTAAAASYDGEGWSEGVDSITDGISDNGHDDGQDYAETEQL
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgctgatttcccagcgaccggctctcggcgaagagacggtcaacgagacccgctcccgg
ttcaccatcgaaccgctggagcccggcttcggctacacgctcggcaactcgctgcggcgc
acgcttctgtcgtccattcctggcgcggccgtgacgagcatccgcatcgacggcgtgctg
cacgagttcaccaccgttcccggggtgaaggaagacgtcaccgacatcatcctgaacctc
aaggaactcgtggtctcctcggaagaggacgagccggtcaccatgtacctgcgcaagcag
ggccccggtgaggtcaccgccgccgacatcgtgcccccggccggtgtcaccgtgcacaac
ccggatctgcacatcgcgtcgctgaacggcaagggcaagctcgagatcgagctcgtcgtc
gagcgcggccgcggttacgttccggccctgcagaacaagcaggcgggcgcggagatcggc
cggatcccggtcgactccatctactccccggtgctgaaggtgacctacaaggtcgaggcg
actcgtgtcgagcagcgcaccgacttcgacaagctgatcctggacgtggagacgaagccg
tcgatcacgccgcgggacgctgtcgcgtcggccggtaagacgctggtggagctgttcggt
ctcgcgcgcgagctgaacgtcgacgccgaaggcatcgagatcggcccgtcgccgcaggag
gcggacaccatcgccgcctacgcgatgccgatcgaggacctggacctcaccgtccggtcg
tacaactgcctcaagcgcgagggcatccacaccgtcggcgaactggtctcgcgcagcgag
gccgacctgctggacatccgcaacttcggtgcgaagtcgatcgacgaggtcaagctcaag
ctcgtcggtctcggcctcgcgctgaaggacagcccgcccgggttcgacccgaccgcggcc
gcggccagctacgacggtgaaggctggtccgagggcgtcgacagcatcacggacggaatt
tcggacaacggccacgacgatggccaggactacgcagagacggagcagctgtaa
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