Amycolatopsis sp. TNS106: CVV72_27425
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Entry
CVV72_27425 CDS
T10876
Name
(GenBank) B/F/G family RNA polymerase sigma-70 factor
KO
K03090
RNA polymerase sigma-B factor
Organism
amys Amycolatopsis sp. TNS106
Brite
KEGG Orthology (KO) [BR:
amys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amys03021
]
CVV72_27425
Transcription machinery [BR:
amys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CVV72_27425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_23
Sigma70_ECF
HTH_3
HTH_24
MarR_2
LacI
HTH_31
HTH_IclR
HTH_Crp_2
HTH_28
PF0610-like_N
HTH_38
HTH_7
HTH_AsnC-type
HTH_26
DUF7343
HTH_37
HTH_Tnp_ISL3
KORA
MarR
DUF134
CENP-B_N
GerE
Motif
Other DBs
NCBI-ProteinID:
QXV63232
LinkDB
All DBs
Position
6048364..6049083
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AA seq
239 aa
AA seq
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MCALPQSAPEREALRDELVRTHLELARNLARKFRNRDESMEDLVQIATIGLIHAVDRFDP
GQGSDFLAFAVPTISGELRHHFRDNSWSVRVPRRLKELNANISAVREELTVRLSRAPKPS
EIAAHLGVPIDEVYEGLRAGQGRYGASLDNLLENSAHTRFGEADANLSQAELREALRPML
ERLPDRERKIVALRFGSGMSQSDIARRVGVSQMQVSRLLASTLKKLREGLTETELTDGV
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgctgccccagagcgctcccgaacgcgaagcgctgcgcgacgagctggtgcgc
acgcacctcgaactcgcgcgcaacctggcacgcaagttccgcaaccgggacgagtcgatg
gaggacctggtccagatagcgacgatcgggctgatccacgccgtcgatcggttcgatccc
gggcagggcagcgatttcctggccttcgcggtccccaccatctccggcgagctgcgccac
cacttccgcgacaacagctggtcggtgcgagtgccgcggcggctcaaggagctgaacgcg
aacatctcggccgtgcgcgaggagctgacggtccggctctcccgcgcgccgaagcccagt
gagatcgccgcccatctcggcgttccgatcgacgaggtctatgaaggtctccgtgccggc
caaggccggtacggcgcctcgctggacaacctcctggagaactccgcgcacacccgcttc
ggcgaggccgacgccaatctgagtcaggcggagctgcgtgaggcgctgcggccgatgctg
gaacggctgcccgaccgtgagcgcaagatcgtcgcgctgcggttcgggtccgggatgagc
cagtcggatatcgcccgccgtgtcggggtttcccagatgcaggtgtcgaggttgctggcc
tccacgctcaagaaactgcgtgaaggactgacggagacggaactcacggacggagtctga
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