Amycolatopsis sp. TNS106: CVV72_37005
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Entry
CVV72_37005 CDS
T10876
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amys Amycolatopsis sp. TNS106
Pathway
amys03030
DNA replication
amys03430
Mismatch repair
amys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVV72_37005
03430 Mismatch repair
CVV72_37005
03440 Homologous recombination
CVV72_37005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amys03032
]
CVV72_37005
03400 DNA repair and recombination proteins [BR:
amys03400
]
CVV72_37005
Enzymes [BR:
amys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CVV72_37005
DNA replication proteins [BR:
amys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CVV72_37005
DNA repair and recombination proteins [BR:
amys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CVV72_37005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QXV62044
LinkDB
All DBs
Position
8010952..8014473
Genome browser
AA seq
1173 aa
AA seq
DB search
MDSFVHLHVHTEYSMLDGAAKIAALFAEAERLGMPAVGMTDHGNMYGADEFYRQSVRAGL
KPVIGIEAYLAPESRFHKKPVLWGRRGDGGDVSGGGAYTHMTLLAENATGLRNLFKLSSL
ASLEGYYRKPRMDRELLARHHEGVIATTGCPSGEVQTRLRLGQPGEALQAASDYRDIFGA
DGFFLELMDHGLPIERSVRDGLLDIGRRLGLKPLATNDSHYVTRDQAAAHSALLCVQSGK
TLDDPGRFKFDGDGYYLKAAEEMREYWDTEVPGAADSTLLIAERIEPYDDVYRHVDRMPV
FEVPDGHDEESWLREEVAAGLRRRLPDGVPEAYLARADFEIEVIAEKGFPAYFLITADLM
NHARRVGIRVGPGRGSAAGSLVAYALGITNLDPIDLGLLFERFLNPERVSMPDIDMDFDD
RRRGEMIRYATDKYGAEHVAQVITFGTIKTKAAIKDAARVHYGQSGYAIADRISKALPPP
VAAKDIPLAGIVERDHERYAEAAEVRDLLEGDGEAAKIFETARGLEGLIRNAGVHACAVI
MSSEPLLDAIPLWRRDDGAVITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALDNIKANRG
EEIDLDTLGVEDPATYELLARGDSLGVFQLDGGAMRDLLRRLRPTGFGDIIAVNALYRPG
PIAMNTHNNYADRKNGRQPIESIHPELADPLREILAETHGLIVYQEQIMRIARDVAGYSM
GRADVLRKAMGKKKKEVLEKEFEGFRDGMLANGFSPEAVQALWDAILPFAGYAFNKSHAA
GYGLVGYWTAYLKANYPAEYMAGLLTSVGDNKDKSAVYLAECRRLGIEVLPPDVNESELR
FSAVGDAIRFGLGAVRNVGANVVDSIIKTRREKGKYASFTDFLDKSELVACNKRVIESLA
KAGAFDSLGHTRLSILRAHEDAVDAVVPLKRKQAMGQFDLFGPGEQSEEGTSPLAHLRFG
DEEWPRKELLAHEREMLGLYVSAHPLDGAEHLLRAHAPRPIAAILDNPPREGELVVAGIV
TSLERRVNKKGEPWAICTIEDLDAALEVLFFPKAYALFAADLAEDNAVRVSGRVNWREDK
MSVVGGGLVPLDLSTADDGEPPLTLHATAERLTEDAVLELKRTLLAHQGRTPVRVKLAET
VYALDDYPVAVSSMLLGELKSIPGITPSRAAKP
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggactccttcgtgcacctgcacgttcataccgagtactcgatgctcgacggcgccgcc
aagatcgcggccctgttcgcggaggccgagcggctcggcatgcccgcggtgggcatgacc
gaccacgggaacatgtacggcgcggacgagttctaccggcagtccgtccgggccgggctc
aaaccggtgatcggcatcgaggcctacctcgcgccggagtcccgtttccacaagaaaccg
gtgctctggggacgtcgaggcgacggcggcgacgtctccggtggcggcgcctacacgcat
atgaccctgctggcggagaacgcgaccgggttgcggaacctgttcaagctgtcctcgctg
gccagcctggagggctactaccgcaaaccccggatggaccgggaactcctcgcccggcac
cacgaaggcgtcatcgccaccaccggatgcccgtcgggcgaggtgcagaccagacttcgg
ctcggccagcccggcgaggcgctccaggcggcgtcggactaccgcgacatcttcggcgcg
gacggcttcttcctcgaactgatggaccacgggctcccgatcgaacggtccgtacgggac
gggttgctggacatcgggcgcaggctcgggctgaaacccttggccaccaacgattcgcat
tacgtcacgcgggatcaggccgccgcgcattcggcgttgctgtgcgtccagtccggcaag
accctcgacgatcccggccggttcaagttcgacggcgacggctactacctcaaagccgcg
gaggagatgcgggagtactgggacacggaagtcccgggagcggccgattccacgctgctc
atcgccgaacggatcgagccctacgacgacgtctaccggcatgtcgatcgcatgccggtc
ttcgaagtccccgacggacacgacgaggagtcctggttgcgcgaggaggtcgcggccggg
cttcgccgccgtctgccggacggcgtccccgaggcgtacctcgcccgcgccgacttcgag
atcgaggtgatcgccgagaagggcttcccggcgtacttcctgatcaccgccgacctgatg
aaccacgcccgtcgcgtcggcatccgggtcggaccaggccgcggctcggcggcgggctcg
ctcgtggcgtacgcgctcggcatcaccaatctggacccgatcgacctcgggctgctcttc
gaacggttcctcaatccggagcgggtctccatgccggacatcgacatggacttcgacgac
cgccgccgcggggagatgatccggtacgccaccgacaagtacggcgccgagcacgtcgcc
caggtgatcaccttcggcaccatcaagacgaaggcggcgatcaaggatgccgcgcgcgtc
cactatggacagagcgggtacgcgatcgcggaccggatctccaaagcgctcccgccgccg
gtcgcggcgaaggacatcccgctcgccgggatcgtcgagcgggaccacgagcggtacgcc
gaagcggcggaggtccgtgacttgctggaaggcgacggcgaggcggccaagatcttcgag
accgcgcgcggtctcgaaggcctgatccgcaacgcgggggtgcacgcctgcgcggtcatc
atgtcgagtgaaccgctgctcgacgcgatcccgttgtggcggcgggacgacggcgcggtc
atcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaagatggacttcctc
ggcttgcggaacctcaccgtcatcggtgacgcgctcgacaacatcaaggccaatcgcggc
gaggagatcgatctcgacacgctcggcgtcgaggatccggcgacctacgagctgctcgcc
cgcggtgacagtctcggcgtcttccagctggacggcggtgcgatgcgggatctgctgcgc
aggctgaggccgaccggattcggcgacatcatcgcggtgaacgcgttgtaccggccgggt
ccgatcgcgatgaacacgcacaacaactacgcggaccgcaagaacggcaggcagccgatc
gagtcgatccatcccgagctggccgatccgctgcgcgagatcctggccgagacgcacggc
ctgatcgtgtaccaggaacagatcatgcggatcgcgcgggacgtcgcgggctattccatg
gggcgcgccgacgtgctgcgcaaggcgatgggaaagaagaagaaagaggtactggaaaag
gagttcgagggtttccgcgacggcatgctcgccaacggcttctcgcctgaggccgtgcag
gccctctgggacgcgatcctgccgttcgccggctacgcgttcaacaagtcccacgccgcc
ggctacggactggtcggctactggacggcgtatctgaaggcgaactacccggccgagtac
atggccggcctgctgacttcggtgggggacaacaaggacaagtcggcggtctacctcgcg
gaatgccgtcggctggggatcgaggtgctgccgccggacgtcaacgaatcggagctccgt
ttctccgccgtgggcgacgcgatccggttcgggctgggcgcggtgcgcaacgtcggtgcg
aacgtcgtcgactcgatcatcaagacccgtcgtgagaaggggaagtacgcgtcgttcacc
gacttcctcgacaagtcggaactggtggcctgcaacaaacgcgtcatcgagtccctggcc
aaagcgggtgctttcgactcgctcgggcatacgcggctgtcgatcctgcgggcgcacgag
gacgcggtggacgccgtggtgccgctgaaacgcaaacaggcgatgggccagttcgacctc
ttcggcccgggcgagcagagcgaggagggcacctcaccgctcgcgcatctcaggttcggc
gacgaagagtggccccgcaaggaattgctcgcccacgaacgggagatgctcggcctgtac
gtatccgcgcatccgctcgacggggcggaacacctcctgcgggcgcacgcgccgcggccg
atcgcggcgatcctcgacaacccgccgcgcgagggtgaactggtcgtcgccgggatcgtc
acgtcactggagcggcgggtgaacaagaagggcgagccgtgggcgatctgcacgatcgaa
gatctggacgccgcgctcgaggtgctgttctttcccaaggcgtatgcgctgttcgcggcg
gatctcgccgaggacaacgccgtccgcgtcagcggccgggtgaactggcgggaggacaag
atgtccgtggtcggcggcgggctcgttccgctcgatctttcgacggcggacgacggggag
ccgccgttgaccctgcacgcgaccgccgagcggctgaccgaggacgcggtcctcgaactg
aagcggactctgctggcacaccaaggacgaacaccggtccgggtgaaactggccgagacg
gtgtacgcgctcgacgactatccggtcgccgtcagttcgatgctcctcggcgagctgaaa
tccatccccggcatcacaccgagccgcgccgcaaaaccctga
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