Malaciobacter mytili: AMYT_0072
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Entry
AMYT_0072 CDS
T05895
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amyt
Malaciobacter mytili
Pathway
amyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMYT_0072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyt03019
]
AMYT_0072
03009 Ribosome biogenesis [BR:
amyt03009
]
AMYT_0072
Enzymes [BR:
amyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMYT_0072
Messenger RNA biogenesis [BR:
amyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMYT_0072
Ribosome biogenesis [BR:
amyt03009
]
Prokaryotic type
rRNA helicases
AMYT_0072
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Peptidase_S46
NAT10_TcmA_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXH13698
UniProt:
A0AAX2AJI3
LinkDB
All DBs
Position
complement(67696..69177)
Genome browser
AA seq
493 aa
AA seq
DB search
MTFKEFDFKQNLQKSIDEAGFKEPSPIQQDAIPVILQGKDIVGQAHTGTGKTAAFGLPIL
NMMKCNKEVEAVVIVPTRELAMQVSDELYKFGKNLNINTATVYGGQSYSRQLKHIENASI
LIATPGRFLDLLRDKKISINPSFVVLDEADEMLDMGFLDDIKEIFTFLPEKRQTLLFSAT
MPNAIKQLAKSILNEPEFITITQSEITNSKITQTFYVVDEYERDDALIRLYDFKNPEKSI
IFCRTKKEVDRLSTFLVSQGFSAKGLHGDMEQRQREEAINAFKKGKLEILIATDVAARGL
DVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGVAVSIVTPHEFRMIQKIQKTTGGKLE
AKTIPTIKLVKDKKTNSLIEKIKEQEVHDAALKIVEDLKESYDISTIAFKLASILSSSTY
VKGNNNIGKSEKDILKLIENSSKSDRDDRSRGGRRGGSRNFNNRRSNSSRRDSSSNSKSS
SGKPSSNRRRRSS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
gtgacttttaaagagttcgatttcaaacaaaatttacaaaaatcaattgacgaagcggga
tttaaagagccaagtccaattcaacaagatgcaattccagtaattttacaaggtaaagat
attgtaggacaagcacatacaggtacaggaaaaactgctgcatttggtcttccaatttta
aatatgatgaagtgtaacaaagaagtagaagcagttgttattgttcctacaagagagctt
gcaatgcaagtatctgatgaattatataaatttgggaaaaatttaaatataaatactgca
acagtatatggtggacaatcatattctagacaattaaagcatattgaaaatgcttctatt
ttaatagcaacaccaggaagattcttagatcttttaagggataaaaaaataagtattaac
ccaagtttcgtagtattagatgaagctgatgaaatgcttgatatgggatttttagatgat
attaaagaaatctttacatttctaccagaaaaaagacaaactttactattttctgcaaca
atgccaaatgctattaagcaacttgcgaaatctattttaaatgaaccagaatttatcaca
attacacaaagtgagattacaaattctaaaattactcaaacattttatgttgttgatgag
tatgaaagagatgatgctcttattagattatatgattttaaaaacccagaaaaatcaatt
atcttttgtagaacaaaaaaagaagtagatagactttctacatttttagtatctcaaggt
tttagtgcaaaaggtcttcatggtgatatggagcaaagacaaagagaagaggctattaat
gcctttaaaaaaggtaaattagaaattcttattgcaacagatgttgcagcaagaggatta
gatgttaatgatgtaacacacgtatttaactatcatttaccatttgattctgaaagttat
gttcatagaattggaagaacaggaagagcaggtaaagaaggtgttgctgtttcaattgtt
actccacatgagtttagaatgatacaaaaaattcaaaaaactacaggtggaaaacttgaa
gcaaaaacaattcctactattaagttagttaaagataaaaaaactaactctttaattgaa
aaaattaaagaacaagaagttcatgatgctgcattaaaaatcgtagaagatttaaaagag
agttatgatatttctacaattgcttttaaattagcttctattttatcaagctctacttat
gtaaaaggaaacaataacattggaaaatctgaaaaagatattttaaaacttattgaaaat
tcttctaaaagtgatagagatgatagatcaagaggtggaagaagaggaggttctagaaac
ttcaataatagaagaagtaactcttcaagaagagattcatcttcaaactcaaaaagttca
tctggaaaaccttcttcaaatagaagaagaagatcttcataa
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