Malaciobacter mytili: AMYT_1828
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Entry
AMYT_1828 CDS
T05895
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
amyt
Malaciobacter mytili
Pathway
amyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMYT_1828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyt03019
]
AMYT_1828
Messenger RNA biogenesis [BR:
amyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMYT_1828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
TFIIA_gamma_N
KH_NusA_C
Cas3_HD
YjcZ
Motif
Other DBs
NCBI-ProteinID:
AXH15399
LinkDB
All DBs
Position
complement(1858876..1860432)
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AA seq
518 aa
AA seq
DB search
MELMMESILVGVITALLSSLISILIVKKLYSAKFDILIEQAKAKAKIIEHEAEVILKDAQ
IKAKRDYDKEFRTAKKEYDEMLFQIEKKEKELNKHLESELRIIKEQKAEIVEKNQKITTI
KDGLKRQQKTYEEKIAKAIKVLENASGLTIEEAKELMLEKVKEDSRAQIASIFRKKYKAA
EQKSKEEINNMLSQAVTRYAGEFAAERLINNLPLSDEETKGKIIGKEGRNIKALEMLLGV
DIIIDDTPNTITISSFNLYRRAIATKTIEELLEDGRIQPARIEEIYKKVKAEFDKNIQKE
GEDVVLELGIGSMHPELIKLVGRLRYRASYGQNALKHTLEVAHLAGLLAAQMGGDPILAR
RAGLLHDIGKALTHEMPGSHVHLGAEMCRRYDESDTVINAIYAHHGHEEPINVESAAVCA
ADALSAARPGARREVLESFLKRVEEVENISTSKTGVLNAFAINAGREVRVIVKAELVNDD
EAVLLANEIAQDIEAKVQYPGEIKVNVIREIRAESYAR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggaattaatgatggaatcaattttagttggtgttataactgcactactaagttcattg
attagtatactaatagttaaaaagttatatagtgcaaaatttgatatcttaatcgagcaa
gcaaaagctaaagctaaaataattgagcatgaagcagaagtaattttaaaagatgctcaa
attaaggctaaaagagattatgataaagagtttaggacggcaaaaaaagagtatgatgag
atgctttttcaaatagagaaaaaggaaaaagagttaaataaacatcttgaatcagaatta
agaattataaaagaacaaaaagctgaaatagtagaaaaaaatcaaaaaattaccactatt
aaagatggattaaaaagacaacaaaaaacttatgaagaaaaaattgctaaagctataaaa
gttttagaaaatgcttctgggcttactattgaagaagcaaaagagcttatgcttgaaaaa
gtaaaagaggatagtagggctcaaattgcatcaatttttagaaaaaaatataaagctgct
gaacaaaaatctaaagaagagataaataatatgttatctcaagctgttactaggtatgca
ggagaatttgcagcagaaagacttattaataacttaccattaagtgatgaggagactaag
gggaagattattggtaaagaaggaagaaatataaaagcattagagatgcttttaggtgtt
gatattattattgatgatacaccaaatacaattacaatttcatcttttaacctatataga
agagcaattgctactaaaactattgaagagttattagaagatggaagaatacaacctgca
agaattgaagaaatttataaaaaagttaaagcagagtttgataaaaatatccaaaaagag
ggtgaagatgttgtattagaactaggtattggttcaatgcatccagaacttataaaactt
gttggaagattaagatatagggcttcttatgggcaaaatgctttaaaacatactttagaa
gtggctcatttagctggacttttagcagctcaaatgggaggagatcctattttagcaaga
cgagctggtcttttacatgatataggaaaagcattaactcatgaaatgccaggctcacat
gtacacttaggtgctgaaatgtgtagaagatatgatgaaagtgacacagttataaatgct
atttatgctcatcatggacatgaagaacctataaatgtagaaagtgcagctgtatgtgca
gctgatgctttaagtgcagcaagaccaggggctagaagagaagtattagaaagcttctta
aaaagagtagaagaagttgaaaacatctctacaagtaaaacaggagttttaaatgccttt
gctattaatgcaggaagagaagttagagttatagtaaaagctgagttagtaaatgatgat
gaagcagttctattagcaaatgaaattgctcaagatattgaagcaaaagttcaatatcct
ggtgaaattaaagtaaatgtaattagagaaataagagctgaaagttatgctagataa
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