Malaciobacter mytili: AMYT_2392
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Entry
AMYT_2392 CDS
T05895
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
amyt
Malaciobacter mytili
Pathway
amyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMYT_2392 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyt03021
]
AMYT_2392 (rho)
03019 Messenger RNA biogenesis [BR:
amyt03019
]
AMYT_2392 (rho)
Transcription machinery [BR:
amyt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMYT_2392 (rho)
Messenger RNA biogenesis [BR:
amyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMYT_2392 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
S1CSD-TOTE-2
OB_RNB
AAA_22
DUF5010
AAA
DUF5815
Motif
Other DBs
NCBI-ProteinID:
AXH15927
LinkDB
All DBs
Position
complement(2429257..2430612)
Genome browser
AA seq
451 aa
AA seq
DB search
MEESNTQSKTTKSSKAATACASASKKARTHIPVEGHTIEKLREYPLEDLLKIAKELKVEN
PQELKRQDLVFSILKNQIDAGGFVLFTGILEIKEGGFGFLRAIDGNFSDTSSDSYVSATQ
IRKFALRTGDIVTGQVRPPNKESEKYYALLKIEAINYLPVNESKNRPLFDNLTPLYSTKR
FKFEYDSSKMTGRILDLFAPMGKGQRGLIVAPPKTGKTELLKELAHGIARNHPETHLMVL
LIDERPEEVTDMQRSVKGEVYSSTFDLPAHNHVRVAEIVIEKAKRLVEMKKDVVILLDSI
TRLARAYNTVTPSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIETGSKM
DEVIFEEFKGTGNSEVVLSRNAANRRVYPALDIVKSGTRKEELLLTPEVLQKTWILRNAI
SQMDEVEALKFLYSKMQKTKDNEEFFASMNE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtcaaatactcaatcaaaaacaacaaaaagctcgaaagcagcaacagcgtgt
gctagtgctagcaaaaaagcaaggacacatattcccgttgaagggcatacgatagaaaaa
ttaagagaatatcctctcgaagatttattaaaaattgcaaaagaacttaaagtagaaaat
ccgcaagagcttaaaagacaagacttagtattctctattttaaaaaatcaaattgatgca
ggcggattcgtcttatttacaggtattttagaaataaaagagggtggttttggtttctta
agggcaattgatggaaacttttcagatacttcaagtgattcttatgtatccgcaacacaa
attagaaaatttgctttaagaacaggtgatattgtaacagggcaggttaggcctccaaat
aaggagagcgaaaaatattatgctttattaaaaattgaagcaataaattatctacctgta
aatgaatcaaaaaatagaccactatttgataacttaactcctttatattctacaaagaga
tttaaatttgaatatgattcttcaaaaatgactggaagaatacttgacttatttgctcct
atgggtaaaggtcaaaggggacttattgttgcacctcctaaaacaggtaaaactgaacta
cttaaagagttagctcatggtattgcaagaaatcatcctgaaacacacttaatggttcta
ttaatagatgaaagacccgaagaggttactgatatgcaaagaagtgtaaaaggagaagtt
tattcttcaacttttgacttacctgcacacaatcatgtaagagttgctgaaatagttatt
gaaaaagcaaaaagacttgttgagatgaaaaaagatgttgttattcttttagattcaatt
acaagattagcaagagcatataatactgtaacaccaagttctggaaaagttctttcaggt
ggggttgatgcaaatgctcttcataaaccaaagagattttttggagctgcaagaaatatt
gaagaaggtggaagccttactattatctctactgcacttattgagactggttcaaaaatg
gatgaagttatttttgaagagtttaaaggaactggtaactcagaagttgtattaagtaga
aatgctgcaaatagaagagtttatcctgcacttgatattgttaaatcaggaactagaaaa
gaagagttattattaactcctgaagttctacaaaaaacatggattttaagaaatgcaatt
tctcaaatggatgaagttgaagcacttaaatttttatattcaaaaatgcaaaaaacaaaa
gataatgaagagttctttgcttcaatgaatgaatag
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