Amycolatopsis sp. YIM 10: YIM_01440
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Entry
YIM_01440 CDS
T06270
Symbol
ykoV1
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YIM_01440 (ykoV1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_01440 (ykoV1)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YIM_01440 (ykoV1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Rho_N
Motif
Other DBs
NCBI-ProteinID:
QFU85520
UniProt:
A0A5P9PDQ0
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All DBs
Position
complement(294743..295684)
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AA seq
313 aa
AA seq
DB search
MARPIWSGAVNFGLVTVPVELYSATEDHTVHFRQFERGTSDRIRYRRVNERTGKEVDYSD
IVKGYELDDGDYVLIEPEELDEIAPGRSRALDIEAFVDLDEIDPAYFQKTYWLVPSKEEF
ERAYTLLLAAMDKTNKAAISKFVMRGKEYLAAVRAGDGVLVLNTLHFPADLRDPAKELRK
LPAKQKPRGKELDMAVALVDSMSEPWKPKNYQDTYTARVEKLVRDKKAGRTVTPEEEPAQ
ATQVVDLFEALAKSVKGRKPSTASTDLSSLSKADLDKMARDLDIKGRSKLSRAELEKAVK
KASSSSGKQKKAS
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgaccgatctggtccggtgcggtgaacttcggcctggtcacggtgccggtcgag
ttgtacagcgccaccgaggaccacaccgtccacttccgccagttcgaacgcggcacgtcg
gaccggatccggtaccgccgggtgaacgagcgcaccggcaaggaggtcgactacagcgac
atcgtcaagggctacgaactcgacgacggcgactacgtgctgatcgagccggaggaactg
gacgagatcgcgccgggccggtcgcgggcgctggacatcgaggcctttgtggacctcgac
gagatcgatccggcgtacttccagaagacgtactggctggtgccgtcgaaggaggagttc
gagcgggcgtacacgctgctgctggccgcgatggacaagacgaacaaggcggcgatctcg
aagttcgtcatgcggggcaaggaatacctggccgcggtccgggccggcgacggggtgctg
gtgctgaacaccctgcacttccccgccgacctgcgggatccggcgaaggagttgcgcaag
ctgcccgcgaagcagaagccacgcggcaaggaactggacatggcggtggcgctggtcgac
tcgatgtccgaaccgtggaaacccaagaactaccaggacacctacaccgcgcgggtggaa
aaactggtgcgggacaagaaggccgggcgcacggtcacgccggaggaggagcccgcgcag
gccacccaggtggtcgacctgttcgaggcgctggcgaagagcgtcaagggacggaagccg
tcgaccgcgtccacggacctgtcctcgctcagcaaggcggacctggacaaaatggcgcgc
gacctggacatcaagggccgctcgaagttgagccgcgccgaactggagaaggcggtcaag
aaggcctcctccagttccgggaagcagaagaaagcctcctga
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