Amycolatopsis sp. YIM 10: YIM_01550
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Entry
YIM_01550 CDS
T06270
Symbol
vsr
Name
(GenBank) Very short patch repair protein
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_01550 (vsr)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
YIM_01550 (vsr)
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Gene cluster
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Motif
Pfam:
Vsr
MTES_1575
DUF559
Motif
Other DBs
NCBI-ProteinID:
QFU85540
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Position
315410..315808
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AA seq
132 aa
AA seq
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MRANRRSDTKPEVALRKELHRLGYRYRKDMRLDLGEGVRVRPDIVFTARRIAVFVDGCFW
HVCPEHGREPTSNEWYWTPKLRRNQERDRIATSSLEQAGWRVVRIWEHEPLPAAVAVVTE
AVKHAFDPKPED
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccaaccggcgctccgacacgaagcctgaagttgctctccgtaaggagttgcat
cggcttggttatcgctaccgcaaggacatgcggctcgacctcggcgagggtgttcgagtg
cggccggacatcgtcttcacggcccgccggatcgcggtcttcgtggacggttgcttctgg
catgtctgccccgagcacggccgggagccgacgtccaacgagtggtactggacgcccaag
ctccggcgcaaccaggagcgcgaccgcattgccaccagttccctcgagcaggctggctgg
cgggtcgtgcgcatctgggagcacgagccgctgccggccgcggtggccgtggtcactgag
gcggtcaaacacgcgttcgatcctaagccggaggattag
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