Amycolatopsis sp. YIM 10: YIM_01940
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Entry
YIM_01940 CDS
T06270
Symbol
dnaX1
Name
(GenBank) DNA polymerase III subunit tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03030
DNA replication
amyy03430
Mismatch repair
amyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YIM_01940 (dnaX1)
03430 Mismatch repair
YIM_01940 (dnaX1)
03440 Homologous recombination
YIM_01940 (dnaX1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyy03032
]
YIM_01940 (dnaX1)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_01940 (dnaX1)
Enzymes [BR:
amyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YIM_01940 (dnaX1)
DNA replication proteins [BR:
amyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YIM_01940 (dnaX1)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YIM_01940 (dnaX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
AAA_22
RuvB_N
AAA_30
DNAX_ATPase_lid
AAA_19
AAA_14
Mg_chelatase
Rad17
AAA_16
DEAD
Motif
Other DBs
NCBI-ProteinID:
QFU85615
UniProt:
A0A5P9PBS9
LinkDB
All DBs
Position
386415..388514
Genome browser
AA seq
699 aa
AA seq
DB search
MALALYRKYRPATFAEVVGQEHVTEPLRTALAAGRINHAYLFSGPRGCGKTSSARIMARS
LNCEQGPTPDPCGECGSCRALAPEGSGSIDVTELDAASHGGVEDARELRDKAFYAPAESR
YRVFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSRTHHYPFRLIP
PSSMRELLERNVAAEGVPVEPAVFPLVIRAGGGSARDTQSVLDQLLAGAGPDGVTYDRAV
SLLGVTDVALIDDMVEGLAADDSTAVFGTVERLAEAGHDPRRFATDLLDRLRDLVILRSV
PDAAARGLVAAPEDELTRMVAQAERAGLATLSRYAEIVHNGLLEMRGATAPRLLLELLCA
RMLLPSAAEGEAALLQRLERLERRATVGGPVEGAAASASASVPAPVASGTAPTSAAAPAG
TASPSSVPATSAAASAGGAERFQRPSQRQAAPSATATPPAPSAPPERPAPAAAEQPAAQE
PSAEPAAPPEVTGGMDAAAVRRVWPELLAAIRKIPGGRSTEAMLTQAGVQSVDGTSVVLT
HSAEPLARRLAEQHNSEKIATALRDVLGGEWRVTCVHGNAKPQAAAPPPQQRQAPQQQHS
AQQVTEEKPQQRFRRPSEGRQAPPPPPEPPKPKVATTEPDIPLPPEPEDEDEYLEAATTP
PPPNGSVPPPPPPPTPAADEVEEKAHRLLSEQLGARPLD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtggcattagcgctgtaccgcaaataccgcccggccaccttcgccgaggtggtgggtcag
gagcacgtcaccgagccgctgcgcaccgcgctcgcggccggccggatcaaccacgcgtac
ctgttctccgggccgcgcggctgcggcaagacctccagcgcccgcatcatggcccggtcg
ctgaactgcgagcagggccccacacccgacccgtgcggcgagtgcggttcgtgccgcgcg
ctcgcgccggagggcagcggcagcatcgacgtcaccgaactcgacgcggccagccacggt
ggtgtcgaggacgcccgtgaactgcgtgacaaggcgttctacgcgccagccgagtcgcgg
taccgggtgttcatcatcgacgaggcgcacatggtcaccacgcagggcttcaacgccctg
ctgaagatcgtcgaagagccgccagagcacctgatcttcatcttcgccaccaccgagccg
gacaaggtgctcaccaccatccggtcgcggacgcaccactacccgttccggctcatcccg
ccgagttcgatgcgcgagctgctggagcgcaacgtcgccgccgagggcgtgccggtggag
cccgcggtgttcccgctggtcatccgtgccggtggggggtccgcgcgggacacccagtcg
gtgctggaccagctgctcgccggggccgggccggacggcgtgacctacgacagggcggtc
tcgctgctcggggtcaccgacgtcgcgctgatcgacgacatggtcgaaggcctggccgcc
gacgattcgaccgcggtgttcggcacggtcgagcggctcgccgaagccgggcacgacccg
cgtcgcttcgccaccgacctgctggaccgcctgcgggacctggtcatcctccgctcggtc
ccggacgcggcggcccgcggcctggtcgcggcgccggaggacgagctgacccgcatggtc
gcgcaggccgagcgggccgggctggccacgctgtcgcggtatgcggagatcgtgcacaac
ggtctgctggaaatgcgcggcgcgacggctccccggttgttgctggagctgctgtgcgcg
cggatgctgctgccttccgccgccgagggcgaggcggcgctgctgcagcggttggagcga
ctggaacgccgggccacggtcggtggcccggtcgaaggtgccgctgcctctgcttctgct
tctgttcccgcccccgttgcctccgggaccgcccccacttccgccgcagcccctgctggg
accgcctctcccagcagcgtccctgcaacttctgctgcggcctcggcaggaggcgcggag
cggttccaacgtccgtcccagcgtcaggccgcgccatccgccactgctacgccacccgcg
ccttccgcgccgccggagcgcccggcgcctgcggccgccgaacagccagcggctcaggaa
ccgagcgcggaaccggcggccccgcccgaggtgaccggtggcatggacgcggcggccgtc
cgccgggtgtggccggagttgctggcggccatccgcaagatccccggcggccgcagcacc
gaggcgatgctgacgcaggccggggtgcagagcgtcgacggcacgtccgtggtcctcacg
cactccgccgaaccgctcgcgcgtcgcctcgccgagcagcacaactccgagaagatcgcc
accgccctgcgtgacgtgctcggtggcgagtggcgggtcacctgcgtgcacggcaacgcc
aaaccgcaggccgcggcgccgccaccgcagcagcgtcaggcgccacagcagcagcacagc
gcacagcaggtgaccgaggagaagccgcagcagcggttccgccggccgtccgagggcagg
caggccccgccgccgcccccggagccgccgaaaccgaaggtggccaccaccgagccggac
atcccgctccccccggaacccgaggacgaggacgagtacctggaagcggcgaccaccccg
ccgcccccgaacggctcggtcccgccgcctccgccgccgcccaccccggctgcggacgag
gtggaggaaaaggcgcaccgcctgctctcggaacaactgggcgcccgccccctcgactga
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