Amycolatopsis sp. YIM 10: YIM_02070
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Entry
YIM_02070 CDS
T06270
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyy03016
]
YIM_02070 (rtcB)
Enzymes [BR:
amyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
YIM_02070 (rtcB)
Transfer RNA biogenesis [BR:
amyy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
YIM_02070 (rtcB)
Prokaryotic type
tRNA splicing ligases
YIM_02070 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFU85641
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Position
412594..413784
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AA seq
396 aa
AA seq
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MYTAVEGARVPIRMWADPHSVEEQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGKLRSRIESAVPVGFNMHRTPVNTAR
VHGVGGWAEFWNRFGELHSGVQDLRKRAHLQVGSLGGGNHFIEVCLEQGGPDEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMQAYRRDLFWAQDYAARN
RATMVALVKQALKDEIPATTFDDAISCHHNYVAEETYDGVDLLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNSHSFESASHGAGRRMSRNKAKKLYTAADLAAQTDGVECRKDAGV
VDEIPAAYKDIDSVIAAQSDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgcggtggagggtgctcgcgtgccgatccggatgtgggcggacccgcattcg
gtggaggagcaggcgatgcgccaactccacaacgtcgccaacctgccctgggtccacggc
gtggccgtgatgccggacgtgcactacgggaagggcgccaccgtcggcagcgtgatcgcg
atgcgtgacgcggtgtccccggccgcggtcggtgtcgacatcggctgcgggatgagcgcg
gtgcggacctcgctgaccgcgtcggacctcccggacgatctcggcaagctgcggagccgc
atcgaatccgcggtgccggtcgggttcaacatgcaccgcacgccggtcaacaccgcgcgc
gtgcacggggtcggcggctgggcggagttctggaaccggttcggtgagctgcactccggt
gtgcaggacctgcgcaagcgggcgcacctgcaggtcggcagcctcggcggtgggaaccat
ttcatcgaggtatgcctcgagcagggcgggccggacgaggggcgggtgtggctgatgctg
cactcgggttcgcgcaacatcggcaaggaactggccgagcggcacatggcggtggcgcgg
aagttgccgcacaacgccgacctgccggaccgcgacctcgctgtttttgtggcgggcacg
ccggaaatgcaggcgtaccggcgggatctgttctgggcgcaggactacgccgcgcgcaac
cgggcgaccatggtcgcgctggtgaagcaggcgctcaaggacgaaatcccggccaccacc
ttcgacgacgcgatcagctgccaccacaactatgtggcggaggagacgtacgacggggtg
gacctgctggtgacgcgtaagggcgcgatccgcgcgggttcgggggatctcgggatcatc
ccgggcagcatgggtaccggctcgtacatcgtgcgcggccttggcaactcgcactccttc
gagtccgcgtcccacggagcggggcgacggatgtcgcggaacaaggcgaagaagctgtac
accgccgccgacctcgccgcccagaccgacggtgtcgaatgccggaaggacgcgggcgtg
gtggacgagatcccggccgcctacaaggacatcgactcggtgatcgccgcgcagtcggac
ctggtcgaggtggtcgcgcacctcaagcaggtcgtctgcgtcaagggctga
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