Amycolatopsis sp. YIM 10: YIM_06295
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Entry
YIM_06295 CDS
T06270
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YIM_06295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyy03021
]
YIM_06295
03019 Messenger RNA biogenesis [BR:
amyy03019
]
YIM_06295
Transcription machinery [BR:
amyy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
YIM_06295
Messenger RNA biogenesis [BR:
amyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YIM_06295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
QFU86476
UniProt:
A0A5P9PDX0
LinkDB
All DBs
Position
1277615..1279684
Genome browser
AA seq
689 aa
AA seq
DB search
MSNTDLLSGDAAPTSDAGGAEPQANGTAAPKRRPGGLSGMVIADLRSLAGELGISDTAGM
RKGDLIAAIRERQGKTKRRGSAAATATGAETLPLDGIDGGKPAETKARAPRKEAAKATEQ
PKTEAKPEQAEQAAPAAKAPAAEPQQAERKGAESAESEAPSGDQSSAGEDGGRREGGRRR
RGSNRPADSSGGGSGEREQRRERQQGDRQSGGDRQQGSDQQQRGDRQRGDRNERGDRDRN
ERGDRGDRNDRGDRGDRQNDRQRGQQDNRGGGPQSDDDEEGGRRGRRFRDRRRRGGRGEG
GSPDTEVREDDVLLPVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAIT
GVVRQPREGEQQRQKFNPLVRVDSINGLEPDQAKKRPDFTKLTPLYPNERLRLETEPHKL
TTRVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEVT
DMQRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGLDVVVLLDSITRLGRAYNLA
APASGRILSGGVDSTALFPPKRFLGAARNIENGGSLTIFATAMVETGSTGDTVIFEEFKG
TGNAELKLDRKIAERRVFPAVDINPSGTRKEELLLSPDELAVTLKLHRVLHALDSQQAID
LLLSRLRKTKTNIEFLMQVSKTALGPDED
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatctactgagcggcgacgcggctcctaccagtgacgctggtggggcc
gagccgcaggcgaacggcaccgccgcgccgaaacgccgacccggcggtctgtccggaatg
gtcatcgccgacctgcgttcgctggccggtgaactcggtatcagcgacaccgcgggcatg
cgcaagggcgacctgatcgcggccatccgcgagcgccagggcaagaccaagcggcgcggc
agcgccgccgcgaccgccaccggcgcggagacgcttccgctcgacggcatcgacggcggc
aagcccgccgagacgaaggcacgtgctccgcgcaaggaggcggccaaggccaccgagcag
ccgaagaccgaggccaagccggagcaggccgagcaggcggccccggccgccaaggccccg
gccgccgagccgcagcaggccgagcgcaagggcgccgagagcgccgagagcgaggcgccg
tcgggagaccagtcctccgccggcgaggacggtggccgtcgtgagggcgggcgccgccgc
cgcggctcgaaccgcccggccgactcgtccggcgggggttccggcgagcgcgagcagcgc
cgcgagcgccagcagggtgaccgccagtccggtggtgaccgccagcaggggagtgaccag
cagcagcgcggtgaccgtcagcgtggcgaccgcaacgagcgtggtgaccgggaccgcaac
gagcgcggcgaccggggtgaccgcaacgaccgcggtgaccgtggcgaccggcagaacgac
cgccagcgcggccagcaggacaaccggggcgggggcccgcagtccgacgacgacgaagag
ggcggccgtcgcggtcgccgcttccgcgaccgccgccgccgcggtggccgcggtgagggt
ggcagcccggacaccgaggtgcgcgaggacgacgtcctgctcccggtggccggcattctc
gacgtgctggacaactacgcgttcgtccgcacctcgggttacctggccgggccgaacgac
gtgtacgtctcgctgtcgctggtccgcaagtacggcctgcgccgcggggacgccatcacc
ggtgtggtgcgccagccgcgtgagggtgagcagcagcggcagaagttcaacccgctggtg
cgcgtggacagcatcaacggcctcgagccggaccaggcgaagaagcgcccggacttcacc
aagctgaccccgctgtacccgaacgagcgcctgcggctggagaccgagccgcacaagctc
accacccgcgtgatcgacctggtgatgccggtcggcaaggggcagcgcgcgctgatcgtg
tcgccgccgaaggccggtaagaccacgatcatgcaggacatcgcgaacgcgatcaccacg
aacaaccccgagtgccacctgatggtggtgctggtcgacgagcggccggaagaggtcacc
gacatgcagcggtcggtgaagggcgaggtcatcgcctccaccttcgaccgcccgccgtca
gaccacacctcggtcgccgagctgtccatcgagcgggccaagcgcctggtcgagatgggc
ctcgacgtggtggtgctgctcgactcgatcacccgcctcggccgcgcctacaacctggcg
gccccggcttccgggcgcatcctgtccggtggtgtcgactcgaccgcgttgttcccgccg
aagcgcttcctcggcgcggcgcgcaacatcgagaacggcggctcgctgaccatcttcgcc
acggcgatggtggaaaccgggtccaccggtgacacggtgatcttcgaggagttcaagggc
accggcaacgccgagctcaagctggaccgcaagatcgccgagcggcgcgtcttccccgcg
gtggacatcaacccgtccggtacccgcaaggaggagctgctgctctcgccggacgagctg
gcggtgacgctgaagctgcaccgggtgctgcacgcgctggactcgcagcaggcgatcgac
ctgctgctgtcccgcctgcgcaagacgaagaccaacatcgagttcctgatgcaggtctcc
aagaccgcgctgggtcccgacgaggactga
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