Amycolatopsis sp. YIM 10: YIM_06670
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Entry
YIM_06670 CDS
T06270
Symbol
uvrD1
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03420
Nucleotide excision repair
amyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YIM_06670 (uvrD1)
03430 Mismatch repair
YIM_06670 (uvrD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_06670 (uvrD1)
Enzymes [BR:
amyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YIM_06670 (uvrD1)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YIM_06670 (uvrD1)
MMR (mismatch excision repair)
Other MMR factors
YIM_06670 (uvrD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QFU86548
UniProt:
A0A5P9PE42
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All DBs
Position
1361545..1363629
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AA seq
694 aa
AA seq
DB search
MGSASVSEAKPGLLDGLDPEQRAAAGAPRGPVCVLAGAGTGKTRTITHRIAHLVRSGHVA
AGQVLAVTFTNRAAGELRARLRGLGVESAQARTFHAAALRQLRYFWPRVVGGPQWDLIEN
NKLRLIGQAANRAGLGTEIEVLRDLASEIEWAKASLVVAEDYPAVVTRLRRDTPEPADRI
AQVYAGYEELKNNARLLDFDDLLLHTIAALEEHSAVSEEFRDRYRCFVVDEYQDVTPLQQ
RLLDAWLGGRDDLTVVGDANQTIYSFGGASPRPLLEFTRRFPDATVVRLERDYRSTPQVV
ALANKVIGAARNRPAGSRLRLIGQRPDGPEPRFAEHEDEATEASSVAARIHDLLELGVPA
SEIAILYRVNAQSEAYEQALSELNIPYLVRGGERFFQRKEIRQAVIALRSAAAAGQRGEF
VDSVRAVLAPVGLTEQPPSGGGAAKERWDALLALVELAEELAATVEGADLDRFVAELEQR
AAAQHPPTVEGVTLASLHAAKGLEWDAVFLVGLAEGTLPIQHADGDEAAIEEERRLFYVG
VTRAREHLSLTWSLFRNGRNRRRSRFLYGLLPENHPAARVARSAQVRSTGQRQACRICEG
PLTGTMAIKLGRCDRCPSTVDEQVLDRLKYWRGNRSRELKVPAFVVFTDATLVAIAEQCP
VDESALVSISGIGQTKLERFGAEILAVVREAVGS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgggtagtgcatccgtctccgaagccaagccaggcctgctcgacgggctcgaccccgaa
cagcgcgccgccgccggagcgccacgcggccccgtctgcgtgctcgccggggccggtacg
ggcaagacccgcacgatcacgcaccgtatcgctcacctggtgcgatccggtcatgtggcg
gctggtcaggtactcgctgtcaccttcaccaaccgggccgcgggcgagctgcgggcccgg
ctgcgcggcctcggggtggagagtgcgcaagcccgcacgttccacgccgccgcgctgcgc
cagctccggtacttctggccgcgggtcgtcggcgggcctcagtgggacctgatcgagaac
aacaagctccggctgatcggccaggccgccaaccgggccgggctgggcaccgagatcgag
gtgctgcgtgacctggccagcgaaatcgagtgggcgaaggcctcgctcgtcgtcgccgag
gactatccggccgtcgtcacccgcctccgccgcgacacgcccgagcccgccgaccggatc
gcgcaggtttacgcgggttacgaagagctgaagaacaacgcgcgcctgctcgacttcgac
gacctcctgctgcacaccatcgccgcgctcgaagaacacagcgcggtctcggaggagttc
cgcgaccgctaccgctgcttcgtcgtcgacgagtaccaggacgtgaccccgctgcagcag
cgtttgctcgacgcctggctcggcggtcgtgatgatctgacggtcgtcggtgacgccaac
cagaccatctactccttcggcggcgcctcgccgcggccgctgctggagttcacccgtcgc
ttccccgacgccactgtcgtccggctggagcgcgactaccggtccactccgcaggtggtg
gcgctggcgaacaaggtgatcggcgccgcccgcaaccgtcctgctggttcgcggctgcgg
ctgatcgggcagcgtccggacggtcccgagccgcggttcgccgagcacgaggacgaggcg
accgaggccagttccgtcgccgcccgcatccacgacctgctcgaactcggcgtgccggcg
agcgagatcgcgattctctaccgggtgaacgcccagtcggaggcgtacgaacaggcgctc
tccgagctgaacatcccgtacctggtccgcgggggcgaacggttcttccagcgcaaggag
atccgccaggcggtgatcgcgctgcgcagcgcggccgcggccgggcagcgcggcgagttc
gtcgactcggtgcgcgcggtgctggcgccggtcggtctgaccgagcagccgccctccggt
ggcggggccgccaaggagcgctgggacgcgctgctcgccctggtcgagctggccgaggaa
ctcgccgcgacggtggaaggggcagacctcgaccgcttcgtggcggagctggagcagcgg
gccgccgcccagcacccgccgaccgtcgaaggggtcacgctggcttcgctccacgcggcg
aagggcctcgaatgggacgcggtgttcctggtcggcctcgccgagggaacgctgccgatc
cagcacgcggacggcgacgaagccgcgatcgaggaggagcggcgcctcttctacgtgggc
gtgacccgtgcgcgtgagcacctgtcactgacctggtcgctgttccggaacggacgcaac
cgacgccgcagccggttcctctacggcctgctgcccgagaaccacccggccgcccgtgtc
gcgcggagtgcgcaggtgcggtccaccggccagcggcaggcctgccggatctgcgaaggc
ccgctgaccggcacgatggcgatcaagctgggccgatgcgaccgttgtccgtccaccgtg
gacgaacaggtgctggaccggctgaagtactggcgcggaaatcggtcgcgcgaactcaag
gttcctgcttttgtggtgttcaccgatgccacgctggtcgccatcgccgagcagtgcccg
gtcgacgagagcgcgctcgtgtcgatctccggcatcggccagaccaagctcgaacggttc
ggcgcggagatcctcgcggtggtccgcgaagctgtcggctcgtag
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