Amycolatopsis sp. YIM 10: YIM_06970
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Entry
YIM_06970 CDS
T06270
Symbol
hrpB1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyy03019
]
YIM_06970 (hrpB1)
Enzymes [BR:
amyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YIM_06970 (hrpB1)
Messenger RNA biogenesis [BR:
amyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
YIM_06970 (hrpB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_19
AAA_22
AAA_25
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
QFU86606
UniProt:
A0A5P9PE97
LinkDB
All DBs
Position
complement(1418601..1420976)
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AA seq
791 aa
AA seq
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MSAELPVTAVLGDLGDALAAHGTAVLVAPPGTGKTTLVPPSLAERTDGRVVVAEPRRLAA
RAAAARMASLLGEPVGETVGYSVRGDRRVSKRTRIEVVTSGLLVRRLQHDPELPGVSTVL
LDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVAADRLAALLDGPVLTAHARTFP
IEHVYSPPSRNERIEACVARTIHKALSEADGDVLAFLPGAAEIGRVSKLLSGVDVFPLHG
RLTAAQQDAALRQGKQRRVVLATAVAESSLTVPGVRIVVDSGLSRVPRVDHRRGLPGLAT
VRVSAAVADQRAGRAGREGPGRVYRCWAQHEQASLPAYPEPEIRTAELARLALELACWST
PDGSGLAWWDPPGEGALAAGQAVLRALGATDESGQVTERGRRMAALGLHPRLARALLDGA
REVGPRSAAEVVALLDNGASLTDVDAELRRLRDIGDQRWRREAQRLAKLVDGGPEKPDSA
LVVALAHPERLARRRAAGSPVYLMAGGTAAELGSGSGLADAEWLAIGEATRDPGRTNGII
RLAARADAELAESAGAHLLTESDEVHWADGDLVARRVRRLGAIVLSERSLRSPDPELVRK
AVLDGLRTEGLGLLKWTEDATRLRQRLNFLHRAIGAPWPDLTDGTILSTVDLTGVRKRSD
LARVDAGTAVRALLPWPEAAKLDELAPDRLEVPSGSKIRVDYRDEPVLAVKLQETFGWRE
TPKLAGGRVPVVLHLLSPAGRPAAVTADLESFWRNGYHAVRADLRGRYPRHPWPEDPMTA
EPTRRVKPRGQ
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccgaactcccggtcaccgcggtgctcggtgacctcggtgacgcgctggccgcg
cacggcaccgcagtgctggtcgcgccgcccggaacgggcaagaccacgttggtgccgccg
tcgctggccgagcggaccgacggccgggtggtggtggccgagccgcggcggctcgccgcc
cgcgcggcggccgccaggatggcttcgctgctcggcgagcccgtcggcgagacggttggg
tactcggtgcgcggggatcgccgggtgtcgaagcgcaccaggatcgaggtggtcacctcg
ggcttgctggtgcgccgcctgcagcacgacccggagctgcccggggtgtccaccgtgctg
ctggacgagtgccacgaacgccatctcgacgccgacctgctgctcgcgctcctcctggac
gtccgtgccgggctgcgtgacgacctgcggctcctggccacttcggccaccgtcgccgcc
gatcggctggcggcgctgctggacggcccggtgctgaccgcgcacgcgcgcaccttcccc
atcgagcacgtgtactcgccgccgtcccgcaacgaacgcatcgaagcctgcgtcgccagg
accatccacaaggcactgtccgaagcggatggtgatgtgctggcgttcctgccgggcgcg
gcggagatcgggcgggtgtcgaagctgctgtccggggtcgacgtcttcccgttgcacgga
cggctgaccgccgcgcagcaggatgccgcgttgcgccaggggaagcagcggcgggtggtg
ctggcgacggccgtcgcggagtcgagcctgaccgtgccgggcgtgcggatcgtggtggac
tccgggctgtccagggtgccgcgcgtggaccaccgccgcggcctgccggggctggccacc
gtgcgggtgtcggccgcggtggccgaccagcgcgccggtcgtgcgggacgggaggggccg
ggccgggtgtaccggtgctgggcgcagcacgagcaggcctcgttgcccgcttatccggag
cccgagatccgcaccgccgaactcgccaggctcgcgctcgaactggcctgctggtccact
ccggacggcagcgggctggcctggtgggacccgccgggcgagggcgcgctcgccgccggg
caggccgtgctgcgggcgctcggcgccaccgatgagtccggccaggtcaccgaacgcggg
cgccggatggccgcgctcggcctgcacccccggctggccagggcactgctggacggcgcg
cgggaggtcggcccccggtcggcggccgaggtggtcgccctgctggacaacggcgcgtca
ctgaccgatgtggacgccgaactgcgtcgcctccgcgacatcggtgaccagcgctggcgc
cgggaagcgcaacggctggcgaagctggtcgacggcggtccggagaagccggactccgcg
ctggtggtcgcgctcgcgcaccccgagcgcctcgcccgccgccgcgcggccggctcaccg
gtgtacctgatggccggtggtacggcggcggaactcggctcgggcagcggactcgccgac
gcggaatggctggccatcggtgaggcaacccgggatccgggacgtaccaacgggatcatc
cggctcgccgcgcgtgccgacgccgaactggccgagagcgccggtgcgcacctgctgacc
gaatcggacgaagtgcactgggcggacggcgatctggtcgcccgccgggtgcgccgactc
ggcgcgatcgtgctcagcgaacggtcgttgcgctcacccgatccggaactggtgcgcaaa
gcggtgctggacggcttgcgcaccgaaggcctcggcctgctgaagtggaccgaggacgcc
acgcgactgcggcaacggctgaacttcctgcaccgcgccatcggtgcgccgtggccggac
ctcaccgacggaaccatcctgtccactgtggacctgaccggcgtgcggaagcggtccgac
ctggcgcgcgtcgacgccggaaccgcggtgcgcgcgttgttgccgtggcccgaagcggcc
aaactggacgaactggcgccggaccggctggaagtgccgtccggctcgaagatccgcgtc
gactaccgcgacgaaccggtgctcgcggtcaagctgcaggagaccttcggctggcgcgaa
accccgaagctggccggtgggcgcgtgcccgtggtactgcacctgctttcacccgccggg
cgcccggccgcggtgaccgccgacctggagtcgttctggcgcaacgggtatcacgccgtg
cgtgccgacctgcgcggccgctacccgcgccacccgtggccggaggacccgatgaccgcc
gaaccgacccggcgcgtcaaaccacgcggtcagtga
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