Amycolatopsis sp. YIM 10: YIM_09070
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Entry
YIM_09070 CDS
T06270
Symbol
gabR2
Name
(GenBank) HTH-type transcriptional regulatory protein GabR
KO
K00375
GntR family transcriptional regulator / MocR family aminotransferase
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amyy03000
]
YIM_09070 (gabR2)
Transcription factors [BR:
amyy03000
]
Prokaryotic type
Helix-turn-helix
GntR family
YIM_09070 (gabR2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
GntR
HTH_36
Fe_dep_repress
HTH_Crp_2
HTH_24
TrmB
HTH_IclR
HTH_41
MarR
Motif
Other DBs
NCBI-ProteinID:
QFU87022
LinkDB
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Position
complement(1830222..1831637)
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AA seq
471 aa
AA seq
DB search
MAVLWSSSRDVHLDWQPGSGQRGLAEAIRRAIRSGRLETGTALPSTRALAEDLGVARGTV
TKAYNQLAAEGYLRTTQGAPTRVAAIAAPQAAPARPRPGSEEPADARWSLLPGRPDLAAF
PRAEWLAATRKVLQQAPPDVFGYTDDLGAPALRTALARYLARSRGVVTDPDRILVCGGFA
QAISVLAAALHHQGVHEMAFEDPSLHRFRNLAAAAGQRIAGVPVDGAGLRVSELDSPVAV
VTPAHQFPLGVTLAPERRAELARWVTNSGAFAVEDDYDGEFRFDREPVGALQSLAPERFI
YAGTASKTLAPALRLGWLVLPRALVEPVRAAMADRGSRPPALGQHVLAEMLESGKYDQHV
RRRRTVYRNRRDRLLSLLPRPLRPSGISAGLHLLVPLPAAGPDEAAVLDHARRHSLALET
LRNTWISPGPHPQGIVVGYAAPADHAFTPAIDALMATLRDAGVRWSSSSGS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcagttttgtggtccagttcccgggacgttcacctcgactggcagccgggctccggc
cagcgcggactggccgaagcgatccggcgggcgatccggtccggcaggctcgagaccggc
accgccctgccttcgactcgcgcactggccgaagacctcggtgtcgccaggggcaccgtc
acgaaggcctacaaccagctcgcggccgagggctacctgcgcaccacccagggagcgccg
accagggtggccgcgatcgccgccccgcaggcagcaccggcgcggccgcgaccgggcagc
gaggaaccagctgacgcccgctggagcctgctgcccggccggccggacctggccgccttc
ccacgcgcggaatggctggcggccacgcggaaggtgctgcagcaggcacctcccgacgtg
ttcggatacaccgacgaccttggtgcgcccgcgctgcgcaccgcactcgccagatacctc
gcccgcagccggggcgtggtgaccgacccggaccggatcctcgtgtgcgggggcttcgca
caggccatctccgtactcgccgcggccctgcaccaccagggcgtgcacgagatggccttc
gaggatccgtccctgcaccgcttccgcaacctggccgcggccgcggggcagcgcatcgcc
ggcgtaccggtggacggggccggcctccgggtgtccgaattggacagtccggttgccgtg
gtgacgcccgcccaccagttcccgttgggggtgactctcgcccccgagcgccgggccgaa
ctcgccaggtgggtgacgaattcgggagcattcgccgtcgaggacgactacgacggcgag
ttccggttcgaccgggaaccggtgggcgccctgcagtcgctcgctcccgagcgcttcatc
tacgcgggcacggcgagcaagaccctggcgcccgcgctgcgcctgggctggctcgtgctc
ccccgcgccctggtggaacccgtccgggccgcaatggccgaccgcggttcacgtccgccg
gcgctcggccagcacgttctcgccgagatgctcgaatccggcaagtacgaccagcacgtg
cgccgtcgccgcacggtctaccgcaaccgccgggaccggctgctgtccctgctgccacgg
ccgctgcgaccatcggggatctccgcgggactgcacctgctcgtcccgctgcccgctgcc
gggccggatgaagcggcagtgctcgaccacgcacgacggcattcgctcgcactcgagaca
ctccgcaacacctggatctcccctggccctcatccgcagggcatagtcgtcggctatgcc
gcgccggccgaccatgccttcactccggccatcgacgccctgatggccactctccgagac
gccggcgtcaggtggtcatcgtcatcgggaagctga
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