Amycolatopsis sp. YIM 10: YIM_10210
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Entry
YIM_10210 CDS
T06270
Symbol
ddl1
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00470
D-Amino acid metabolism
amyy00550
Peptidoglycan biosynthesis
amyy01100
Metabolic pathways
amyy01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
YIM_10210 (ddl1)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
YIM_10210 (ddl1)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
YIM_10210 (ddl1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
amyy01011
]
YIM_10210 (ddl1)
Enzymes [BR:
amyy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
YIM_10210 (ddl1)
Peptidoglycan biosynthesis and degradation proteins [BR:
amyy01011
]
Precursor biosynthesis
Amino acid ligase
YIM_10210 (ddl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
CPSase_L_D2
ATP-grasp_3
ATP-grasp_4
Motif
Other DBs
NCBI-ProteinID:
QFU87248
LinkDB
All DBs
Position
2053304..2054395
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AA seq
363 aa
AA seq
DB search
MSSAKTRVAVVFGGRSTEHTISCVSAGSVLANLDRERFEIVPIGITRDGGWVLGPSDPER
LRIDGDRLPVVSAGQSLVLTGDRTNRELVSLDGGVDAIGAVDVIFPVLHGAFGEDGTIQG
LLELADVPYVGAGVLASATAMDKEFAKKLLAAEGLPGGDYAVLRRGQSTLPEAERERLGL
PVFVKPARAGSSIGISKVTDWSQLDAAIALARETDPKVLVEAAVVGREIECGVLEFPDGR
VEASLPAEIRVLATDESAWYDFETKYLGEAAELDIPAKLDDQVTERLREMAVDAFHALDC
QGLARVDFFVGADGTLTINEVNTMPGFTTTSAYPKMWAVTGMDYPTLLSTLVDTAIARGT
GLR
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgagctcagccaagacgcgggtcgccgtggtgttcggcggccgtagcaccgagcacacc
atctcctgcgtttcggcgggcagtgtgctggcgaacctggaccgcgagcggttcgagatc
gtgcccatcggcatcacccgggacggcggctgggtgctcggcccgagcgacccggagcgg
ctgcggatcgatggcgaccgcctgcccgtggtctcggccgggcagagcctggtgctcacc
ggcgaccggaccaaccgcgaactggtgtccttggacggcggggtggacgcgatcggcgcg
gtggacgtgatcttcccggtgctgcacggcgccttcggtgaggacggcaccatccagggc
ctgctggaactggcggacgtgccctacgtcggggccggcgtgctcgccagcgccaccgcg
atggacaaggagttcgccaagaagctgctcgccgccgagggcctgcccggcggcgactac
gcggtgctccggcgtggacagtccactttgcccgaagccgagcgcgaacgccttggcctg
ccggtgttcgtgaagccggccagggccgggtcctcgatcggcatcagcaaggtgaccgac
tggtcccagctggacgccgcgatcgcgctggcccgcgagaccgatcccaaggtgctggtg
gaggccgcggtggtcgggcgcgagatcgagtgcggggtgctggagttcccggacggccgc
gtcgaagcctcgctgccggccgagatccgcgtgctcgccaccgacgaaagcgcctggtac
gacttcgaaaccaagtacctcggtgaggccgcggagctggacatcccggcgaagctggac
gaccaggtgaccgaacgcctgcgggagatggccgtcgacgccttccacgcgctggactgc
cagggactggccagggtggacttcttcgtcggcgccgacggcacgctcaccatcaacgag
gtgaacaccatgccgggcttcaccacgacttcggcctatccgaagatgtgggcggtgacc
gggatggactacccgaccctgctgtccactttggtcgacaccgcgatcgcccgcggcacc
ggtctccgctag
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