Amycolatopsis sp. YIM 10: YIM_11305
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Entry
YIM_11305 CDS
T06270
Symbol
ykoV2
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YIM_11305 (ykoV2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_11305 (ykoV2)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YIM_11305 (ykoV2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ku
FliO
Motif
Other DBs
NCBI-ProteinID:
QFU87463
LinkDB
All DBs
Position
2277040..2277909
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AA seq
289 aa
AA seq
DB search
MRAVWKGTIGFGAYAIPVKAYSATTDRASGLTQVHLADGGRIQHRRYCEADGTEVPPGEI
GKGFPLPGGDVVVLTDEDLASLPLATAHSIDVLSFVPMEQVDPVYFARTYYLEPEVAGTK
AYVLLSEAMQQAGRVMVVKVALRQRETLAVIRVRDQLLLLETMLWPDEVRAPDFPFQHED
VDVHVGEVRLAARLIDRLAGDFEPENYVDHYQSALNELITAKVEGGELARPAAAVQNAGV
TALLAALQSGAEIHEGGSAVDRARGAAEKAAEAAEAAKRAAQRKTEPID
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgctgtctggaaaggcacgatcggattcggcgcgtacgccattccggtgaaggcg
tacagcgcgaccaccgatcgcgcctccggcctgacccaggtccacctggccgacggcggc
cgcatccagcaccggcgctactgcgaggccgacggcaccgaggtcccgccgggcgagatc
ggcaagggcttcccgctgccgggcggtgacgtggtggtgctcaccgacgaggacctcgcc
tcgctgccgctggccaccgcgcactccatcgacgtgctgtccttcgtgccgatggagcag
gtcgacccggtctacttcgcccggacctactacctggagccggaggtcgccggtaccaag
gcgtatgtgctgctcagcgaggcgatgcagcaggcgggccgggtgatggtggtcaaggtg
gcgctgcgccagcgcgagacgctggcggtgatccgcgtgcgcgaccagctcctgctgctg
gagaccatgctctggccggacgaggtccgcgcgcccgacttcccgttccagcacgaggac
gtggacgtgcacgtgggcgaggtccggctggcggcccgcctgatcgaccggctggccggc
gacttcgaaccggagaactacgtcgaccactaccagtccgcgctgaacgagctgatcacc
gcgaaggtcgagggcggcgagctggcgcgcccggcggcggccgtgcagaacgccggggtc
accgcgttgctggcggcactgcagtccggtgccgagatccacgagggcggcagcgcggtc
gaccgggcccgcggcgccgcggagaaagcggccgaggcggccgaggcggcgaaacgagcc
gcccagcggaagaccgagcccatcgattga
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