Amycolatopsis sp. YIM 10: YIM_12370
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Entry
YIM_12370 CDS
T06270
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03030
DNA replication
amyy03430
Mismatch repair
amyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YIM_12370 (polC)
03430 Mismatch repair
YIM_12370 (polC)
03440 Homologous recombination
YIM_12370 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyy03032
]
YIM_12370 (polC)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_12370 (polC)
Enzymes [BR:
amyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YIM_12370 (polC)
DNA replication proteins [BR:
amyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YIM_12370 (polC)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YIM_12370 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
Sulfotransfer_3
RNase_H_2
GIY_YIG_2
Motif
Other DBs
NCBI-ProteinID:
QFU87662
LinkDB
All DBs
Position
complement(2532469..2534178)
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AA seq
569 aa
AA seq
DB search
MTASPAGQLAFDELGTPLRDTTFVVFDLETTGTKPGPDGITEIGAVKVRGGEVLGEFATL
VDPGMPIPPQVVSITGITQAMVYDAPRIDRVLPAFLEFISGAVLVAHNAAFDVGFLRAAC
QGHGYPVPKPAVVCTVRLARRVISRQETPSHRLSALAALFNSGTVPNHRALQDARATVDV
LHGLLERVGSVGVQSLEELLDYLPEVTPQQRRKRGMAAHLPTTPGVYLFRGPGGEVLYVG
TASNLRRRVRQYFTGSESRGRIREMVALATGVEGIECAHALEAEIRELRLIAAHRPAYNR
RSKNPHNSWWITLTDEAFPRLSVIRLPRDGALGPFRSQADAKLAADTLSGAAGLRTCTQR
ISAVAPSGKPCVLAELGRCGAPCAGQQSTGEYEPAVIAVADLFAGRDAEPLRSAARQLEL
LSEAQHFEQAARRRDELALLVRSVDRAHRLASLATIPELVAANPDGEGGWEFAVIRYGRL
ASAGVARRGVRPMPVVEMLVASAETVLPGPGPLHGASREEVGILLRWLCRPGVRLVRTSR
PWAEPARGAGSWRPWLDLVGTAAALEHPN
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgtccccggctggccagctcgccttcgacgaactcggcaccccgctgcgggac
accaccttcgtggtgttcgacctggagaccaccgggaccaagccggggccggacggcatc
accgagatcggcgcggtgaaggtgcgcggcggtgaggtgctcggggagttcgccacgctg
gtcgatcccggcatgccgatcccgccgcaggtcgtctcgatcaccgggatcacccaggcg
atggtctacgacgcgccgcgcatcgaccgcgtgctcccggccttcctggagttcatctcg
ggcgcggtgctggtcgcgcacaacgccgccttcgacgtcggcttcctgcgcgcggcctgc
cagggccacggctacccggtgccgaaaccggcggtggtctgcacggtccggctggcgcgc
cgggtgatctcccggcaggagacgcccagccaccggctctccgcgctggccgcgctgttc
aactccggcacggtgccgaaccaccgcgcgctgcaggacgcccgcgccaccgtcgacgtg
ctgcacggcctgctcgaacgggtcggctcggtcggcgtgcagtcgctcgaggagctgctc
gactacctgccggaggtcaccccgcagcagcggcgcaaacgcggcatggccgcgcacctg
cccaccacgcccggcgtctacctgttccgcgggcccggcggcgaggtgctctacgtgggc
accgcgtcgaacctgcggcgccgggtgcggcagtacttcaccggttcggagagccgtggg
cgcatccgcgagatggtcgcgctggccaccggggtggagggcatcgaatgcgcgcacgcg
ctggaggcggagatccgggagctgcggttgatcgccgcgcaccggcccgcctacaaccgg
cggtcgaagaacccgcacaactcgtggtggatcacgctgaccgacgaggcgttcccccgg
ctgtcggtgatccggctgccgagggacggcgcgctcggcccgttccgcagccaggctgac
gcgaaactggccgccgacacgctgtccggggccgccggtctgcgcacctgcacccagcgc
atttcggcggtggcgccgagcggcaagccgtgcgtgctggcggagctggggcggtgcggg
gcgccgtgtgccgggcagcagagcaccggcgagtacgagcccgccgtgatcgcggtcgcg
gacctgttcgccgggcgcgacgcggagcccctgcgctcggcggcgcgtcagctggagctg
ctgtccgaggcacagcacttcgagcaggccgcgcggcggcgggacgagctggcgctgctg
gtccgctcggtggaccgcgcgcaccggctggcctcgctggccaccattcccgaactggtc
gccgcgaaccccgacggcgaaggcggctgggagttcgcggtgatccggtacggccgcctc
gcctcggccggggtcgcgcgccggggggtgcggccgatgccggtggtcgagatgctggtg
gcgtcggcggagaccgtgctgccggggccgggcccgctgcacggggcttcgcgggaggaa
gtcggcatcctgctgcggtggctgtgccgtcccggggtgcggctggtgcgcacgagccgc
ccgtgggccgagcccgcgcgcggggccgggtcctggcggccgtggctggacctggtcggc
acggccgcggcgctggagcacccgaactga
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