Amycolatopsis sp. YIM 10: YIM_12585
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Entry
YIM_12585 CDS
T06270
Symbol
csd2
Name
(GenBank) putative cysteine desulfurase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00450
Selenocompound metabolism
amyy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
YIM_12585 (csd2)
Enzymes [BR:
amyy01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
YIM_12585 (csd2)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
YIM_12585 (csd2)
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
QFU87705
UniProt:
A0A5P9PHX2
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All DBs
Position
2579732..2580856
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AA seq
374 aa
AA seq
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MIFLDSAGSSLPPPQVLDEVIGHLRREAEVGGYRAAAEREDDLERAYPVFAELLGCEPDE
VAFTDSATRSWLTLVDSVPLAPGDRVLISEAEYGANAVALLRLTELSGARLELVPSDESG
QLDVAALRNLLDERVKLVSLVHVPTNGGLVNPVREVTEAAHEAGALVLLDACQSAGQLPV
HAADLGVDLITGTGRKWLRGPRGTGFLVVRREIADRLRPRLFDHSGADWSGLWEYRFRQD
ARLHELWEFGVAERLGLLKAAEYALDLGMEHIAAEVGERASRLRTGLSAIPGVTVHDLGE
RPSGIVTFTVDGLEPSRVKDLLWDKDIVLSVTSEGSTRFDMGRRGLSSMVRASPHYFVTP
AQLDEFLTVVTGLR
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcctggacagcgccggttcgtccctgccgccgccccaggtgctcgacgaggtg
atcgggcacctgcgccgcgaagccgaggtcggcggttaccgcgcggccgccgagcgtgag
gacgacctggagcgcgcctatccggtgttcgccgaactgctcggctgcgaaccggacgag
gtcgccttcaccgacagcgccacccggtcctggctgaccctggtcgactcggtgccgctg
gcgccgggtgaccgggtgctgatcagcgaggccgagtacggcgcgaacgcggtcgcgctg
ctgcggctgaccgagctgtccggcgcgcggctcgagctggtgccgtcggacgagtccggc
cagctggacgtggccgcgctgcggaacctgctcgacgagcgggtcaagctggtctcgctg
gtccacgtgccgaccaacggcggactggtgaacccggtccgcgaggtgaccgaggccgcg
cacgaggcgggggcgctggtgctgctggacgcctgccagtcggcgggccagctgccggtg
cacgccgccgacctgggcgtggacctgatcaccggcaccgggcgcaagtggctgcgcggg
ccgcgcggcaccgggttcctggtggtccggcgcgagatcgccgaccggctgcggccccgg
ctgttcgaccacagcggggccgactggtccgggctgtgggagtaccggttccgccaggac
gcgcggctgcacgagctgtgggagttcggcgtggccgagcgcctcggcctgctcaaagcc
gccgagtacgccctcgacctcggcatggagcacatcgccgcggaggtgggcgagcgggcg
tcgcggctgcgcaccgggctgtccgcgatccccggcgtgaccgtgcacgacctgggggag
cggcccagcggcatcgtcaccttcaccgtcgacgggctcgagccgtcgcgcgtgaaggac
ctgttgtgggacaaggacatcgtgctcagcgtgacgtccgagggctcgaccaggttcgac
atgggacggcgcggcctcagctcgatggtccgggcgtcaccgcactacttcgtcaccccg
gcgcagctcgacgagttcctcaccgtggtgaccggcctgcggtga
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