Amycolatopsis sp. YIM 10: YIM_12985
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Entry
YIM_12985 CDS
T06270
Name
(GenBank) (2E,6E)-farnesyl diphosphate synthase
KO
K13787
geranylgeranyl diphosphate synthase, type I [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00900
Terpenoid backbone biosynthesis
amyy00997
Biosynthesis of various other secondary metabolites
amyy01100
Metabolic pathways
amyy01110
Biosynthesis of secondary metabolites
Module
amyy_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
YIM_12985
09110 Biosynthesis of other secondary metabolites
00997 Biosynthesis of various other secondary metabolites
YIM_12985
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
amyy01006
]
YIM_12985
Enzymes [BR:
amyy01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
YIM_12985
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
YIM_12985
2.5.1.29 geranylgeranyl diphosphate synthase
YIM_12985
Prenyltransferases [BR:
amyy01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
YIM_12985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-ProteinID:
QFU87783
UniProt:
A0A5P9PHV6
LinkDB
All DBs
Position
complement(2660296..2661387)
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AA seq
363 aa
AA seq
DB search
MSEPGFDADFPAHVERALAKFLHEAGDPIREIEPSTGPGVDALSEFVLGGGKRLRPTFAW
WGWRGAGGDPAGPDAEGVLQAVSSLELVQACALIHDDLMDSSDSRRGSPTVHVAFAKRHA
DHGWLGSAASFGQAAAVLLGDLALAWADDMFAGAPLPATTLAAARPAWRAMRTEVLAGQY
LDVHTQATGDASPEAALRIDRLKTAAYTVQRPLHLGAALAGADDRLIGTLLSFGRDLGVA
FQLRDDLLGVFGDPSVTGKPAGDDLREGKRTLLLALGMELADAQGRRADAAVIAEAVGDK
DLTEDAVTVVREALTGVGAVAAVERRIDDLTAAALDSLDAAELAEPATTRLRELAIQATQ
RKY
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagccgggcttcgacgccgatttccccgcacacgtcgagcgcgcgctcgcgaag
ttcctgcacgaagcgggtgacccgatccgcgagatcgaaccgagcaccggtcccggcgtg
gacgcgctgagcgagttcgtgctcggcggcggcaagcggttgcggccgaccttcgcctgg
tggggctggcgcggcgcgggcggcgacccggccgggccggacgccgagggtgtgctccag
gccgtctccagcctcgaactggtgcaggcctgcgcgctgatccacgacgacctgatggac
tcctccgactcgcggcgcggctcgccgacggtgcacgtggccttcgcgaagcgccacgcc
gatcacggctggctcggttcggcggcgagcttcggccaggcggcggccgtgctgctcggt
gacctggcgctggcctgggccgacgacatgttcgccggcgcgcccctgcccgccaccacg
ctggccgccgcccgtccggcgtggcgcgcgatgcgtaccgaggtgctcgccgggcaatac
ctggacgtgcacacccaggccaccggcgacgcctcccccgaggccgcgctgcgcatcgac
cggctgaagacggccgcctacaccgtgcaacgcccgctgcacctcggcgccgcgctggcc
ggcgcggacgaccggctgatcggcaccctgctctcgttcggccgcgatctcggtgtcgcc
ttccagctgcgcgacgacctgctcggcgtgttcggcgacccgtcggtcaccggcaagccc
gccggggacgacctgcgggagggcaagcggacgctgctgctcgcgctcggcatggaactg
gccgacgcgcagggccgccgtgccgacgcggccgtcatcgcggaagcggtcggcgacaag
gacctcaccgaggacgcggtgaccgtggtgcgcgaggcgctgaccggcgtcggcgcggtc
gccgcggtcgaacgccgcatcgacgacctcaccgccgcggcgctcgattcgctcgacgcc
gccgaactcgccgaaccggccaccacccggctgcgggagctggcgatccaagccacgcag
aggaagtactag
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