Amycolatopsis sp. YIM 10: YIM_13890
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Entry
YIM_13890 CDS
T06270
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00470
D-Amino acid metabolism
amyy00550
Peptidoglycan biosynthesis
amyy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
YIM_13890 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
YIM_13890 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
amyy01011
]
YIM_13890 (murD)
Enzymes [BR:
amyy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
YIM_13890 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
amyy01011
]
Precursor biosynthesis
Amino acid ligase
YIM_13890 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
AlaDh_PNT_C
TrkA_N
NAD_binding_7
2-Hacid_dh_C
Shikimate_DH
AdoHcyase_NAD
Pyr_redox
ADH_zinc_N
Motif
Other DBs
NCBI-ProteinID:
QFU87964
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Position
2812492..2813892
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AA seq
466 aa
AA seq
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MELAGRRVLVAGAGVTGKSVVTALLGLGAEVTVTDGNAERLAELDGLGAALAPGLTEPPE
GTALVVTSPGWRPTAPLLVAAGVAGVEVIGDVELAWRIGQDLPVPPVWLAVTGTNGKTTT
VGMLESILRAAGADAVACGNVGYAVLDAVLAGHRVLAVELSSFQLHWSNSLAPRASVVLN
LAEDHIDWHGSMAEYAAAKGKIHQNSATVVHNSLDEWSVRLAAAYAPEHATPVGIGVDTP
RPGELGVVEDLLVDRAFVADPVHSAEELGALSDVRPAGAHNVLNALTAAALARAYGVPAD
AVAKGLREFQPGAHRAVEVGEVAGIRYVNDSKATNPHAAAGSLGAYPDVVWIAGGQLKGA
AVDALVEAAADRLRGVVLLGVDAPVIAAALARHAPDVPVKTLPPGDDEPMTAAVSAASAM
ARPGDVVVLAPAAASLDMFRDYAQRGDAFTAAVHAMAGRGPNSDSS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggagctggccggacgccgtgtgctcgtggccggggcgggggtgaccggcaagtccgtg
gtcaccgcgctgctcggcctcggtgccgaggtcaccgtcaccgatggcaacgccgagcgc
ctcgccgaactcgacgggctgggggccgcgctggcccccggcctgaccgaaccgccggag
ggcaccgcgctggtggtgaccagccccggctggcggccgaccgcgccgctgctggtggcc
gccggggtggcgggcgtcgaggtgatcggggacgtcgagctggcttggcggatcggccag
gacctgccggtaccgccggtctggctggcggtcaccggcaccaacggcaagaccaccacg
gtcggcatgctggagtcgatcctgcgcgcggccggtgccgacgcggtggcctgcggcaac
gtcgggtacgccgtgctggacgcggtactcgccgggcaccgggtgctggccgtggagctg
tcgagcttccagctgcactggtcgaactcgctggcgccgcgcgcgtcggtggtgctcaac
ctggccgaggaccacatcgactggcacggctcgatggcggaatacgccgcggccaagggc
aagatccaccagaactcggccaccgtggtgcacaactcgctcgacgagtggtcggtccgg
ctggccgccgcgtacgcgcccgagcacgcgaccccggtcggcatcggcgtggacaccccg
cgccccggcgagctgggcgtggtggaggatctgctggtcgaccgcgcttttgtggccgat
ccggtgcacagcgccgaggaactgggcgccctgtccgacgtgcgcccggccggtgcgcac
aacgtgctgaacgcgctcaccgcggcggcgttggcgcgtgcgtacggcgtgcccgccgac
gccgtggccaagggcctgcgggagttccagccgggcgcgcaccgggcggtggaggtcggc
gaggtggccgggatccgttacgtcaacgactccaaggccaccaatccgcacgccgccgcc
ggctcgctcggcgcttaccccgacgtggtctggatcgccggtgggcagctcaagggtgcc
gcggtggacgcgctggtcgaggccgcggccgaccggttgcgcggggtggtgctgctcggc
gtggacgcgccggtgatcgccgccgctttggcgcgacacgcgccggatgtcccggtgaag
acgctcccgccgggtgacgatgagcccatgactgcggcggtgagtgcggccagtgccatg
gcacgtccaggggacgtggtggtgctcgcgcccgcggccgcctcattggacatgttccgc
gactacgcccagcggggcgatgccttcactgccgcggtgcatgccatggcgggccggggg
ccgaacagtgacagcagctga
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