Amycolatopsis sp. YIM 10: YIM_21595
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Entry
YIM_21595 CDS
T06270
Symbol
gabD4
Name
(GenBank) Putative succinate-semialdehyde dehydrogenase [NADP(+)] 2
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00250
Alanine, aspartate and glutamate metabolism
amyy00310
Lysine degradation
amyy00350
Tyrosine metabolism
amyy00650
Butanoate metabolism
amyy00760
Nicotinate and nicotinamide metabolism
amyy01100
Metabolic pathways
amyy01120
Microbial metabolism in diverse environments
Module
amyy_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
YIM_21595 (gabD4)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
YIM_21595 (gabD4)
00310 Lysine degradation
YIM_21595 (gabD4)
00350 Tyrosine metabolism
YIM_21595 (gabD4)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
YIM_21595 (gabD4)
Enzymes [BR:
amyy01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
YIM_21595 (gabD4)
1.2.1.20 glutarate-semialdehyde dehydrogenase
YIM_21595 (gabD4)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
YIM_21595 (gabD4)
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Motif
Pfam:
Aldedh
DUF1487
Motif
Other DBs
NCBI-ProteinID:
QFU89498
UniProt:
A0A5P9PMD5
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Position
complement(4450576..4452150)
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AA seq
524 aa
AA seq
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MTVTPVALTRPASVTDAFLRQLVARVPGSAGATWQLTEVYTGETLVELPQSTPSDIERAF
TVAREAQRKWAATPLKRRLAVFKRAHALFVDRARTVTDLIQVESGKNRQMAIEETCDPAM
VMSHYLKRAARLLAPTKRGGPVPLLTNSTEIRQPKGVVGIIAPWNFPFATGISDAVPALM
AGNAVVLKPDNKTALSPLYGIRLLEEAGLPEGLFQVVCGEGPDVGPTLIDNADYVMFTGS
TATGRVIGERAGRNLIGCCLELGGKNPMIVLPDADLSEAVQGAVFGAFGNTGQICMHIER
IYLPESRYEEFKKAFVAKAEALDVRAAYDFGPDMGSLVSVDHMRRVKSHVDDAVAKGATV
LCGGKPRPDLGPAFFEPTILEGVTKDMLCGVTETFGPVVALHRYRTVDDAVELANDTDYG
LNASVWGSDLAAARAVAARIESGNVNINDILATAYASKGTPSGGVKTSGVGARHGDQGLL
KYTDVKNLAVLKKQVMGPKPGQDHEKYVKGMLSGLKIMRKLRIR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcaccccagtcgcactcacccgtccggcgtcggtcaccgacgcgttcctgcgc
cagctcgtcgccagagtgcctggctcggccggtgcgacctggcagctcaccgaggtctac
accggcgaaaccctggtcgagcttccgcagtcgacgccgtccgacatcgagcgggcgttc
accgtcgcgcgcgaggcgcagcggaagtgggcggccaccccgctcaaacggcggctggcg
gtgttcaagcgggcgcacgcgctcttcgtcgaccgggcgaggaccgtcaccgacctgatc
caggtcgaaagcggcaagaaccggcagatggcgatcgaggagacctgcgacccggcgatg
gtgatgagccattacctcaagcgggccgcccggctcctcgcgccgaccaagcgcggcggg
ccggtgccgctgctgacgaactcgaccgagatccggcagcccaagggcgtcgtcggcatc
atcgcgccgtggaactttccgttcgccaccggcatttccgacgccgtgcccgcgctgatg
gccgggaacgcggtggtgctcaagccggacaacaagaccgcgctctcaccgctctacggc
atccggctgctcgaagaggccgggctgccggagggcctgttccaggtggtgtgcggtgag
ggcccggacgtcggcccgacgctgatcgacaacgccgactacgtgatgttcaccggctcc
accgccaccggccgggtgatcggcgagcgggccgggcgcaacctgatcggctgctgcctc
gaactcggcggcaagaacccgatgatcgtgctgcccgacgccgatctgagcgaggccgtg
cagggcgcggtgttcggcgcgttcggcaacaccgggcagatctgcatgcacatcgagcgg
atctacctgccggaatcgcggtacgaggagttcaagaaggcgttcgtggccaaggccgaa
gcgctcgacgtgcgcgccgcctacgacttcgggcccgacatgggctcgctcgtctcagtc
gaccacatgcggcgcgtcaagtcgcatgtggacgatgcggtggccaagggcgccaccgtg
ctctgcggtggcaagccgcgccccgacctcggcccggcgttcttcgagccgacgatcctc
gagggcgtcacgaaggacatgctgtgcggggtcaccgaaaccttcgggcccgtggtcgca
ctgcaccggtaccgcaccgtggacgacgccgtggaactggccaacgacaccgactacggc
ctcaacgcctcggtctggggcagcgatctcgccgccgcgcgcgccgtcgccgcccgcatc
gagtcgggcaacgtcaacatcaacgacatcctcgccaccgcctacgcctcgaagggaacg
ccgtccggcggcgtgaagacctcgggggtcggcgcccggcacggcgatcaggggctgctc
aagtacaccgacgtgaagaacctggccgtgctcaagaagcaggtcatgggaccgaagccg
ggacaggaccacgagaaatacgtcaaagggatgctttccggcctgaagatcatgcgaaag
ttgcgcattcgctga
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