Amycolatopsis sp. YIM 10: YIM_21895
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Entry
YIM_21895 CDS
T06270
Symbol
lcfB4
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00061
Fatty acid biosynthesis
amyy00071
Fatty acid degradation
amyy01100
Metabolic pathways
amyy01212
Fatty acid metabolism
amyy02024
Quorum sensing
amyy04146
Peroxisome
Module
amyy_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
YIM_21895 (lcfB4)
00071 Fatty acid degradation
YIM_21895 (lcfB4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
YIM_21895 (lcfB4)
09145 Cellular community - prokaryotes
02024 Quorum sensing
YIM_21895 (lcfB4)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
amyy01004
]
YIM_21895 (lcfB4)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amyy04147
]
YIM_21895 (lcfB4)
Enzymes [BR:
amyy01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
YIM_21895 (lcfB4)
Lipid biosynthesis proteins [BR:
amyy01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
YIM_21895 (lcfB4)
Exosome [BR:
amyy04147
]
Exosomal proteins
Exosomal proteins of breast milk
YIM_21895 (lcfB4)
Exosomal proteins of breast cancer cells
YIM_21895 (lcfB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
ACT_AHAS_ss
ACT
Motif
Other DBs
NCBI-ProteinID:
QFU89557
LinkDB
All DBs
Position
4521406..4522917
Genome browser
AA seq
503 aa
AA seq
DB search
MDVSARIGEVMALDPAVPVVQYEGRWSTWGEVRAVAHSIEERLAGVPRSTPIALITRNRP
GVVAAILGLLAARRHCLTINGMHPDTAVLAELNHLRPAAVIACAEDWTRAGLTDCVAGIG
ATGLRIGDDLSGVDEVVARPAGSPPPVEGEPDVAISLQTSGTTGPPKRIAMTYSNIDASV
TGVLKHYGSGDEETPAALRPGVAVQMLPLGHTSALLALCVMAVEGRRMVLLDRFEPWAWA
TAVRDHKIAVSGMPPAALRMVLDAKIPADHLTSLRAVRAGTAPLDPALADEFSRTYDIPV
IQAYGATEFQGVASWTLRDYKKFGPTKRGSVGRAHPGVDLRVVSPEDDTPLPVNAIGVLE
VRSKQSAGSRTEDWIRTSDLARIDADGFLFIEGRTDDVINRGGFKVGASEVAEVLTAHPG
VGSAVVVGAPDRRLGAVPVALVTPSGEAGLPSEDELRDWVRTRLEAYKVPVRVTAVPELP
RNATMKVGVREVLELVGWGGERA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtgtccgctcggatcggcgaagtgatggccctggatcccgcggtccccgtcgtg
cagtacgaaggacggtggagcacctggggtgaggtgcgcgccgtcgcccactcgatcgag
gaacgcctcgccggggtgccgcggtccacgccgatcgcgctgatcacccgcaaccggccc
ggcgtcgtcgccgcgatcctcgggctgctggccgcgcggcggcactgcctcacgatcaac
ggcatgcacccggacaccgccgtgctggcggagctgaaccacctgcggccggccgcggtg
atcgcctgcgcggaggactggacgcgcgcgggcctcaccgactgcgtcgccgggatcggc
gccaccggactccggatcggcgacgatctgtccggagtggacgaagtcgtcgcccgcccg
gcgggctcgccgccgcccgtggagggtgaacccgacgtcgcgatcagcctgcagacgagc
ggcaccaccggtccgcccaagcgcatcgcgatgacctactccaacatcgacgcctcggtc
accggcgtgctcaagcactacggctcgggcgatgaggagacgccggccgcgttgcgcccg
ggcgtggcggtccagatgctccctctgggccacaccagcgctctgctcgccctgtgcgtg
atggccgtcgaaggcaggcggatggtgctgctggaccgcttcgagccgtgggcgtgggcg
actgcggtccgcgaccacaagatcgccgtgtcgggcatgccgcccgcggcgctccggatg
gtgctcgacgccaagatcccggcggaccacctcacctccctgcgggcggtgcgggccggt
accgccccgctggatccggcgctcgccgacgagttctcccgcacctacgacatcccggtc
atccaggcctacggggccaccgaattccagggcgtggccagctggacgctgcgcgactac
aagaagttcggccccaccaagcggggcagtgtcgggcgggcgcacccgggtgtggatctg
cgcgtcgtgtcgcccgaggacgacacgcccctgcctgtgaacgccatcggcgtgctggag
gtgcgctcgaagcagagcgccggttcccgcaccgaggactggatccggaccagcgacctg
gcccgcatcgacgcggacggcttcctgttcatcgaggggcgcaccgacgacgtcatcaac
cgcgggggtttcaaggtcggcgcgtccgaggtcgccgaggtgctcaccgcccaccccggg
gtcgggtcggccgtggtggtcggggcgccggatcgccgcctcggcgccgtcccggtcgcc
ctggtcacgccctcgggcgaagccggcctcccgtcggaggacgaactgcgcgactgggtc
cgcacccggctggaggcctacaaggtcccggtgcgggtgaccgcggtgccggagttgcca
cgcaacgccacgatgaaggtcggggtgcgcgaggtcctggagctggtcggctggggaggc
gagcgggcgtga
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