Amycolatopsis sp. YIM 10: YIM_31035
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Entry
YIM_31035 CDS
T06270
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amyy03016
]
YIM_31035 (rnd)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
YIM_31035 (rnd)
Transfer RNA biogenesis [BR:
amyy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YIM_31035 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
QFU91373
UniProt:
A0A5P9PTA9
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Position
6522831..6524087
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AA seq
418 aa
AA seq
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MDTADQDGATSGTPESPAPIPLREPAEGTPGVIADPEELERACARIAEGAGAIAVDTERA
SGYRYWPKAYLVQLRREGVGSFLVDPIPLSGQLGPLADVLNGAEWVLHAASQDLPCLAEL
ELRPTALFDTELAGRLAGYDRVALGTLVEKLLGYQLEKGHSAADWSRRPLPVDWLNYAAL
DVELLIPLREKLEAELEAQGKLDWARQEFEAVRTAPPPPPRAEPWRRVSGIHKIRSPRGL
AAVREFWQIRDEMARKRDRAPSRVLPDSAIVSAVLADPKTTAELQALPVFSGRVQRKFAS
TWMRPLQVARTLAKSELPLPAQPTDGPPPPNRWADKDPEAAARLSAARAALNALAEHHRL
PVENLLLPELVRRTCWRPPEDLSEAGVAEVLRAGGARPWQIELTAPALAKALTAKPEA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
gtggataccgctgatcaggacggcgcgacgtccggcacgccggagtcaccggcgccgatt
ccgctgagggaaccggccgaaggcacccccggggtcatcgcggacccggaggaactggag
cgcgcctgcgcccggatcgccgaaggggccggggcgatcgcggtggacaccgaacgagca
tccggttaccgctactggcccaaggcctacctggtgcagctgcgccgggagggcgttggc
tccttcctcgtcgaccccatcccgctgagcgggcagctggggccgctcgccgacgtgctc
aacggcgccgaatgggtgctgcacgcggcttcccaggacctcccctgcctcgccgagctg
gagctgcggccgaccgccctgttcgacaccgaactggcgggccgcctggccggttacgac
cgcgtcgcgctcggcacgctggtcgagaagctgctcgggtaccagctggagaaggggcac
agcgcggccgactggtcccgccgcccgctgccggtcgactggctgaactacgccgcactg
gatgtggaactgctgatcccgctgcgcgaaaagctcgaagccgaactcgaagcacagggc
aagctcgactgggcacggcaggagttcgaagccgtgcgcaccgctcccccgcccccgccg
cgggccgagccgtggcgccgggtctccggcatccacaagatccgctccccgcgcgggctg
gccgcggtcagggagttctggcagatccgcgacgagatggcccgcaagcgcgaccgcgcg
cccagccgagtgctgccggacagcgcgatcgtcagcgccgtgctggccgatccgaagacc
accgccgaactgcaggcgctgcccgtgttcagcgggcgcgtccagcggaagttcgcctcg
acctggatgcggccgctgcaggtggcgcgcacgctggccaagtcggaactgccgctgccc
gcccagcccaccgacggcccgccgccgccgaaccgctgggccgacaaggaccccgaggcc
gccgcgcggctgtccgcggcgagggccgcgctcaacgcgctggccgagcaccaccggctg
ccggtggagaacctgctgctgccggagctggtccggcgcacctgctggcgcccgccggag
gacctcagcgaggccggggtcgccgaggtgctgcgcgcgggcggggcccggccgtggcag
atcgagctgaccgcgcccgcgctggcgaaggcactcaccgccaaacccgaggcctga
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