Amycolatopsis sp. YIM 10: YIM_32060
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Entry
YIM_32060 CDS
T06270
Symbol
polA3
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03030
DNA replication
amyy03410
Base excision repair
amyy03420
Nucleotide excision repair
amyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YIM_32060 (polA3)
03410 Base excision repair
YIM_32060 (polA3)
03420 Nucleotide excision repair
YIM_32060 (polA3)
03440 Homologous recombination
YIM_32060 (polA3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyy03032
]
YIM_32060 (polA3)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_32060 (polA3)
Enzymes [BR:
amyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YIM_32060 (polA3)
DNA replication proteins [BR:
amyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YIM_32060 (polA3)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
YIM_32060 (polA3)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YIM_32060 (polA3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_lambd_f
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QFU91575
UniProt:
A0A5P9PU87
LinkDB
All DBs
Position
complement(6753481..6756195)
Genome browser
AA seq
904 aa
AA seq
DB search
MSPAENTQVANDTPRLLLIDGHSMAYRAFFAVPADRFRTTTGQVTNAVFGFTSMLINLLR
DEQPTHLAVAFDLSRQTFRSEAYADYKAGRSATPDDFKGQVDLVKDVLGVLGIPILTKEN
YEADDIIATLTTQSEALGYQVLICTGDRDALQLVTDAVTVLYPRKGVSDLVRFDPAAVSE
KYGLTPSQYPDFAALRGDPSDNLPGIPGVGEKTATKWIQQFGSLNDLIDRVDEVKGKAGD
ALRAHLSSVALNRQLTELVREVPLEASPPELELKPWDRDAVHRLFDELEFRVLRDRLFAT
LSSAEPEADEGFEVTGAALEPGQVGGWLAEHAAAGTVTGLSFRTTGASVTADVLSIAFAA
EDGAGAYLDVSTLDETDEKALVAWLADEKAGKSGHALKVAVHGMLARGWRLSGLRTDTEL
AAYLVRPGQRSFELDDLTLRYLSRELRSDADEGDGQLSLLDGAEGADAKIVQAELVRARA
IAELTGALHEELGKMNGTKLLDEIELPLFEVINELEAAGIAVDIEQLTELEAHYASRVHQ
AAEAAYEVIGKQINLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADALQTLFEKTEHPFL
QHLLEHRDATRLRTTVEGLIKSIADDRRIHTTLYQTIAATGRLSSTEPNLQNIPIRTEEG
RRIRDAFVVGEGYSDLMTADYSQIEMRIMAHLSEDAALIESFQSGFDFHAATAAKVFGVE
PGEVTGAQRAKIKAMNYGLAYGLSAYGLSAQLRISTEEARGLMDDYFAGFGGVRDYLQSV
VVEAGKVGYTETIFGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHR
ALTEAKLRSRVLLQVHDELVLEVADGEHDELEALVRKEMGAAYELAVPLEVSVGYGRSWN
DAAH
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccagccgagaacacccaagtagcgaacgacacaccccgcctgttgctcatcgac
gggcactcgatggcgtaccgcgccttcttcgcggtacccgccgaccggttccgcaccacc
accggccaggtcaccaacgcggtgttcgggttcacctcgatgctgatcaacctgctgcgc
gacgagcagccgacccacctcgcggtcgcgttcgacctctcgcgccagaccttccgctcg
gaggcctacgccgactacaaggcgggccgctcggccaccccggacgacttcaagggccag
gtcgacctggtcaaggacgtgctcggggtactgggcatcccgatcctgaccaaggagaac
tacgaggccgacgacatcatcgccacgctgaccacgcagtcggaggcgctcggttaccag
gtgctcatctgcaccggcgaccgcgacgcactgcagctggtcaccgacgcggtcaccgtg
ctctacccgcgcaagggcgtctcggacctggtgcgcttcgacccggccgcggtgtcggag
aagtacgggctcaccccgtcgcagtacccggacttcgccgcgctgcgcggggacccctcg
gacaacctgcccggcatcccgggggtgggggagaagaccgcgaccaagtggatccagcag
ttcggctcgctgaacgacctgatcgaccgggtggacgaggtcaagggcaaggcgggtgac
gcgctgcgcgcccacctcagctcggtcgcgctgaaccgccagctcaccgagctggtccgc
gaggtgccgctggaggccagcccgccggagctggaactcaagccgtgggaccgcgacgcg
gtgcaccggctgttcgacgagctggagttccgcgtgctgcgggatcggctgttcgccacg
ctgtccagcgccgagcccgaggccgacgagggcttcgaggtcaccggcgccgcgctggag
ccggggcaggtcggcggctggctggccgagcacgcggccgcgggcacggtgaccgggctg
tccttccgcaccaccggtgcctcggtcaccgccgacgtgctctcgatcgcgttcgccgcc
gaggacggcgccggtgcctacctcgacgtgtccactctggacgaaaccgacgagaaggcg
ctggtggcctggctcgccgacgagaaggcgggcaagagcgggcacgcgctgaaggtggcc
gtgcacgggatgctcgcccgcggctggcggctgtccgggctgcgcaccgacaccgagctg
gccgcgtacctggtccgccccggccagcgctcgttcgaactggacgacctgaccctgcgc
tacctcagccgcgagctgcgctcggacgccgacgagggcgacgggcagctctcgctgctc
gacggggccgagggcgccgacgccaagatcgtgcaggccgagctggtgcgggcgcgcgcg
atcgccgagctgaccggcgcgctgcacgaggaactcggcaagatgaacggcaccaagctg
ctcgacgagatcgagctgccgctgttcgaggtgatcaacgagctggaggcggccgggatc
gcggtcgacatcgagcagctcaccgaactcgaggcgcactacgcgagccgcgtgcaccag
gccgccgaagccgcctacgaggtgatcggcaagcagatcaacctcggctcgccgaagcag
ctgcaggtggtgttgttcgacgagctgcagatgccgaagaccaagcgcaccaagaccggg
tacaccaccgacgcggacgcgctgcagaccctgttcgagaagaccgagcacccgttcctg
cagcacctgctcgaacaccgcgacgccacccgcctgcgcaccacggtggaggggctgatc
aagtccatcgcggacgaccggcgcatccacaccacgctgtaccagaccatcgcggccacc
gggcggctctcgtccaccgagccgaacctgcagaacatcccgatccgcaccgaggagggc
cgccgcatccgcgacgccttcgtggtcggcgagggttacagcgacctgatgaccgcggac
tacagccagatcgagatgcggatcatggcgcacctgtccgaggacgccgcgctgatcgag
tcgttccagtccgggttcgacttccacgcggccaccgcggcgaaggtgttcggcgtggag
cccggcgaggtcaccggcgcgcagcgggccaagatcaaggcgatgaactacggcctggcc
tacgggctgtcggcgtacgggctctccgcgcagctgcgcatctccaccgaggaggcgcgc
gggctgatggacgactacttcgccgggttcggcggggtgcgcgactacctgcagtccgtg
gtggtggaggcgggcaaggtcggttacaccgagaccatcttcggccgccgccgctacctg
cccgacctgaacagcgacaaccggcagcgccgcgagatggccgagcggatggcgctcaac
gcgccgatccagggcagcgcggccgacatcatcaaggtcgccatgctcaacgtgcaccgc
gcgctgaccgaggcgaagctgcgcagccgggtgctgctccaggtgcacgacgaactggtg
ctcgaagtcgccgacggcgagcacgacgagctggaagcgttggtgcgcaaggaaatgggc
gccgcctacgaactggccgtgccactggaggtctcggtcggctacggccgttcgtggaac
gacgcggcgcattag
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