Amycolatopsis sp. YIM 10: YIM_34775
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Entry
YIM_34775 CDS
T06270
Symbol
dapE4
Name
(GenBank) putative succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00300
Lysine biosynthesis
amyy01100
Metabolic pathways
amyy01120
Microbial metabolism in diverse environments
amyy01230
Biosynthesis of amino acids
Module
amyy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
YIM_34775 (dapE4)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
amyy01002
]
YIM_34775 (dapE4)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
YIM_34775 (dapE4)
Peptidases and inhibitors [BR:
amyy01002
]
Metallo peptidases
Family M20
YIM_34775 (dapE4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Motif
Other DBs
NCBI-ProteinID:
QFU92116
UniProt:
A0A5P9PUN4
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All DBs
Position
complement(7346556..7347728)
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AA seq
390 aa
AA seq
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MHDAIRAWLEPRADEMVELLTELVAVETENPPGRDLGTCARLLRDAMTRLGLAPEVIELA
PSGELEEPAVVRGTAGAGEELLYFHGHFDVVPVQDRGQFTLERRDGRLIGRGTADMKGGL
VSMLYGAAAARELGLLGDGRIVLHLVCDEETGSVAGAGHLRAAELADPRAVAMVTAEPSG
GRIWHEACGAISLRVDIRGREAHVGQANTGVNAFAHLLHVARPVEAYAAEMAARDNMVVV
GGLAGGGSNFNVVPGAAFFTVDTRYQPEEDLDAELKRLTGLIEGAAAEIGADVSVEVTQL
QPPAGTSPTHPAAVALARCVGEVEGTPARFERCEGILDIRWYAQLGIPAFAYGAGRLDVS
HGPAEYVDEAALHRCAAVYASYAATMLGGH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgatccgggcctggctcgaaccgcgcgccgacgagatggtggagctgctc
accgaactggtcgccgtcgaaacggagaacccgccgggccgtgatctcggcacgtgcgcg
cgcctgctgcgcgacgcgatgacgcggctggggctggcgccggaggtcatcgagctggcg
ccgtcgggtgagctggaggaaccggccgtggtgcgcggcaccgcgggcgcgggggaggag
ctgctgtacttccacggccatttcgacgtcgtcccggtgcaggaccgcggtcagttcacc
ctcgaacgccgggacggcaggctgatcggccgtggcaccgcggacatgaagggcggcctg
gtcagcatgctctacggtgccgcggccgcgcgggaactcggcctgctcggcgacggccgg
atcgtgctgcacctggtgtgcgacgaggaaaccggcagtgtcgcgggcgccgggcacctg
cgggccgcggagctggccgacccgcgtgccgtggccatggtgaccgccgaaccgagcggc
ggccggatctggcacgaggcgtgcggcgcgatctcgctgcgggtcgacatccggggccgc
gaagcccacgtcgggcaggcgaacaccggggtgaacgcgtttgcgcacctgttacacgtg
gcccgtccggtcgaggcgtacgccgccgagatggccgcgcgggacaacatggtcgtggtc
ggcggactggccggtggcgggtccaacttcaacgtcgtgccgggcgcggcgttcttcacc
gtcgacacccggtaccagccggaggaggacctcgacgccgagctgaagcgcctgaccggc
ctcatcgagggtgccgccgcggagatcggcgccgacgtgtcggtcgaagtgacccagttg
cagccgcccgcgggcacgtcgccgacgcatccggccgcggtcgcgctggctcggtgcgtc
ggcgaggtcgagggcacgcccgcgcggttcgaaaggtgcgaaggcatcctggacatccgg
tggtacgcccagctcggcattcccgcgttcgcctacggtgccgggcggctggacgtttcg
cacggccccgccgagtacgtcgacgaggccgcgctgcaccggtgcgccgccgtctacgcg
tcctacgccgcgacgatgcttggtggtcactag
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